PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34661_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 354aa    MW: 40091.9 Da    PI: 6.2265
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34661_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.13.1e-071153339
                    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                 r C+ +++  + l+C+ ++  lC +C  e H+       H++
  Cotton_A_34661_BGI-A2_v1.0 11 RRLCDYCNQSTALLYCRADSAKLCFSCDREVHSAnqlftkHSR 53
                                689******99*********************65677777765 PP
2zf-B_box24.55.8e-085593440
                    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Htvv 40
                                  C+ ++e +++lfCe+ q+ +C +C  e H +   H ++
  Cotton_A_34661_BGI-A2_v1.0 55 LLCDACNESPASLFCETEQSVFCSNCDWERH-ScslHHRR 93
                                68****************************9.55886655 PP
3CCT60.94.2e-21310353144
                         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                 Re a++RYkeK+ktR+++K++rYesRKa+AesR R+KGrF+k +
  Cotton_A_34661_BGI-A2_v1.0 310 RETAISRYKEKKKTRRYDKHVRYESRKARAESRTRIKGRFAKVK 353
                                 99***************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.523956IPR000315B-box-type zinc finger
SMARTSM003368.4E-14956IPR000315B-box-type zinc finger
PfamPF006438.4E-61153IPR000315B-box-type zinc finger
CDDcd000213.79E-61256No hitNo description
PROSITE profilePS5011910.2965295IPR000315B-box-type zinc finger
PfamPF006431.2E-55593IPR000315B-box-type zinc finger
CDDcd000216.03E-85695No hitNo description
SMARTSM003360.735795IPR000315B-box-type zinc finger
PfamPF062031.2E-15310352IPR010402CCT domain
PROSITE profilePS5101714.803310352IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSDESHTQIQ RRLCDYCNQS TALLYCRADS AKLCFSCDRE VHSANQLFTK HSRSLLCDAC  60
NESPASLFCE TEQSVFCSNC DWERHSCSLH HRRPVEVFTG CPSVSELLSF LGIEDLGNDK  120
ASCWSEEDDG FLDFLIWECP LISGFDGVIV PNDMDHGFKA TDVPPLPKNR NSSCGQHKEE  180
IFHQLHELAK SDPTLTFQKT DLQSLIPETD HFQAASMQTS CKNDAVPVPC PALETSPLQC  240
LKFNDNVEIT NQALLYTEEN ARVANTHVDC SRNIDVNDGP EDQQMKPQTG VGTISALPKV  300
SVHELNSQER ETAISRYKEK KKTRRYDKHV RYESRKARAE SRTRIKGRFA KVKH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623938.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A1U8NFV60.0A0A1U8NFV6_GOSHI; zinc finger protein CONSTANS-LIKE 13-like
STRINGGorai.004G140600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-98B-box type zinc finger protein with CCT domain