PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_34907_BGI-A2_v1.0

Common Name

F383_21887

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 818aa MW: 89593.2 Da PI: 5.6383

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_34907_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.9	9.6e-05	613	651	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLr ++P++ +k ls Le++++Y+ Lq Cotton_A_34907_BGI-A2_v1.0 613 RQLIQDRIKELRGIIPHS----GKQLSIDHLLERTIKYLLFLQ 651 67799**********9....777*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	4.9E-15	59	149	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	9.858	600	650	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-5	613	656	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.7E-4	613	654	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence Send to blast
MGEAAMGSAL KQPLKNLCCS NGWCYGVFWR FDPRNSMLLT LGDAYYEQKM GPLVDKMLLK 60 FHILGEGIIG QAAFTGKHQW IFSDSNGKGS DSAGNENIFQ DESELQDQFS SGIKTIAVIS 120 VGRRGVVQFG STKKILERLE LLAETEKLFY DMGNCHGLTP LEIETCNLDG WFTSFILGQN 180 PTTELGGCSG KPTGWSCSLQ SLIEPSCSVH DYSMNTVQQN LPHLTSQIQT ISMEAQPIST 240 GKIHRVNSLA ANAPCTSEGS ILTSLPSEKG EWDPSIAFPK RDTEQNFRGH STFTSFYSTG 300 ELVDVELRNL DSFGRTKQEQ HSFGTNAGLL DSVISQQRSI EDFNLGDFTT DLSSSFTMDD 360 FSQWFSPFPQ HHILGAGATT TTDPSCSVGF TSVPSVPIGG DAVINIPVGQ IVNSSTSSIA 420 DAFTSNVEKS TMVHDSGNDL FSGTGMDFRL RKAGGFSENI DMPLLHSVNK VVASGMSSSM 480 AGKRKGLFSE LGLEELLGGV NNSSSVAKSS VEDEIFTTRR RKIENSSSNF HLGQLEGLSC 540 SGGGMNLAQY SHTWDKSNDT IFGKEFHLKS QVGLWIDDSY GVKAGNAVVT TAKKPTRKRA 600 KPGESSRPRP KDRQLIQDRI KELRGIIPHS GKQLSIDHLL ERTIKYLLFL QGVTKYADKI 660 KQADEPKLIG QENGKLLKHN TMSGGATWAF EVGAQSIPIV VKDLNPPGQM LVEMLCEDRE 720 FFLEIAEVIR GFPLNILKGV MELQEDKIWA RFIVEADKQI ERTGIIWSLL PLLQQKDNSG 780 IDCATQPSGD MDGGISLLNN PQQQPFLLRP VSVAETLQ

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence Send to blast

MGEAAMGSAL KQPLKNLCCS NGWCYGVFWR FDPRNSMLLT LGDAYYEQKM GPLVDKMLLK  60
FHILGEGIIG QAAFTGKHQW IFSDSNGKGS DSAGNENIFQ DESELQDQFS SGIKTIAVIS  120
VGRRGVVQFG STKKILERLE LLAETEKLFY DMGNCHGLTP LEIETCNLDG WFTSFILGQN  180
PTTELGGCSG KPTGWSCSLQ SLIEPSCSVH DYSMNTVQQN LPHLTSQIQT ISMEAQPIST  240
GKIHRVNSLA ANAPCTSEGS ILTSLPSEKG EWDPSIAFPK RDTEQNFRGH STFTSFYSTG  300
ELVDVELRNL DSFGRTKQEQ HSFGTNAGLL DSVISQQRSI EDFNLGDFTT DLSSSFTMDD  360
FSQWFSPFPQ HHILGAGATT TTDPSCSVGF TSVPSVPIGG DAVINIPVGQ IVNSSTSSIA  420
DAFTSNVEKS TMVHDSGNDL FSGTGMDFRL RKAGGFSENI DMPLLHSVNK VVASGMSSSM  480
AGKRKGLFSE LGLEELLGGV NNSSSVAKSS VEDEIFTTRR RKIENSSSNF HLGQLEGLSC  540
SGGGMNLAQY SHTWDKSNDT IFGKEFHLKS QVGLWIDDSY GVKAGNAVVT TAKKPTRKRA  600
KPGESSRPRP KDRQLIQDRI KELRGIIPHS GKQLSIDHLL ERTIKYLLFL QGVTKYADKI  660
KQADEPKLIG QENGKLLKHN TMSGGATWAF EVGAQSIPIV VKDLNPPGQM LVEMLCEDRE  720
FFLEIAEVIR GFPLNILKGV MELQEDKIWA RFIVEADKQI ERTGIIWSLL PLLQQKDNSG  780
IDCATQPSGD MDGGISLLNN PQQQPFLLRP VSVAETLQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017627802.1	0.0	PREDICTED: transcription factor bHLH157-like isoform X1
TrEMBL	A0A0B0P1W7	0.0	A0A0B0P1W7_GOSAR; Uncharacterized protein
STRING	Gorai.004G130500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15615	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	4e-43	conserved peptide upstream open reading frame 7