PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34913_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 231aa    MW: 25688.7 Da    PI: 5.4473
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34913_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.22.2e-16162214254
                                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                 rk+ ++ keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa 
  Cotton_A_34913_BGI-A2_v1.0 162 RKKLRLCKEQSAFLEESFKEHNTLNPKKKLALAKQLNLRSRQVEVWFQNRRAS 214
                                 56667789*******************************************95 PP
2HD-ZIP_I/II79.36.4e-26162214153
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 
                                 +kk+rl keq+++LEesF+e+++L+p++K +la++L+l+ rqv+vWFqnrRA 
  Cotton_A_34913_BGI-A2_v1.0 162 RKKLRLCKEQSAFLEESFKEHNTLNPKKKLALAKQLNLRSRQVEVWFQNRRAS 214
                                 69*************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.1E-869129IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.609.6E-16152212IPR009057Homeodomain-like
SuperFamilySSF466894.71E-15155213IPR009057Homeodomain-like
PROSITE profilePS5007115.208158218IPR001356Homeobox domain
SMARTSM003892.3E-11160222IPR001356Homeobox domain
PfamPF000466.1E-14162214IPR001356Homeobox domain
CDDcd000867.50E-13162213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MELALSLGDP TKPFSLLGNT PKLSRSKDLG FCMGLGDGFK SQHKIDAFEA QSRGGSDVKR  60
VPSDPPLHLH LLPSSQTQLR IPCLTHEYGD GRGLDVNQLP PAAAAEEDDD EESEEGAAIS  120
SPNSTVSSFR MNFGIRNGKN KGKRDLEVER VSDDDDENGS TRKKLRLCKE QSAFLEESFK  180
EHNTLNPKKK LALAKQLNLR SRQVEVWFQN RRASDDVTID VEVDVIVDRE K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160166TRKKLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5909759e-52JX590975.1 Gossypium hirsutum clone NBRI_GE25995 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640285.11e-155PREDICTED: homeobox-leucine zipper protein HOX11-like
SwissprotP466656e-45HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1U8NHA61e-152A0A1U8NHA6_GOSHI; homeobox-leucine zipper protein HAT14-like isoform X2
TrEMBLA0A1U8NHM01e-152A0A1U8NHM0_GOSHI; homeobox-leucine zipper protein HOX11-like isoform X1
STRINGGorai.002G155800.11e-125(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-31homeobox from Arabidopsis thaliana