PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35030_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 157aa    MW: 17809.6 Da    PI: 10.3755
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35030_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.62.9e-12545343
                                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                                i  +s r++t+ kR +g+ KK  EL +LC++++  +i s++
  Cotton_A_35030_BGI-A2_v1.0  5 ITTDSARKTTYKKRTKGLVKKVRELTTLCGIQAFAVINSPD 45
                                677899***************************99999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.647143IPR002100Transcription factor, MADS-box
CDDcd002661.70E-17280No hitNo description
SMARTSM004327.1E-7255IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-16389IPR002100Transcription factor, MADS-box
PfamPF003197.1E-13545IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MLAYITTDSA RKTTYKKRTK GLVKKVRELT TLCGIQAFAV INSPDFGSQA EVWPSLEDAR  60
RLLSEFKKLP LSKQNNKMVN QESFLEQSLA KATQQLRKLR EENRQKELKE VMFGSLSGKG  120
ILQSLNAMDL DELGRLVKQN WTDIDDMVRV LTKASGS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431016e-80AC243101.1 Gossypium arboreum clone GM203N05-jhe, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618019.11e-112PREDICTED: agamous-like MADS-box protein AGL80
RefseqXP_017618067.11e-112PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A2P5YTP12e-98A0A2P5YTP1_GOSBA; Uncharacterized protein
STRINGGorai.013G210300.11e-94(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-40AGAMOUS-like 80