PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35470_BGI-A2_v1.0
Common NameF383_17472
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 249aa    MW: 28101.7 Da    PI: 8.1024
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35470_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.6e-151562148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g W++eEd++l+++v ++G  +W++++   g+ R +k+c++rw +yl
  Cotton_A_35470_BGI-A2_v1.0 15 KGLWSPEEDLKLKNYVLKHGHLCWSSVPINAGLQRNGKSCRLRWINYL 62
                                678*******************************************97 PP
2Myb_DNA-binding53.36.5e-1768113148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg +T++Ed+ ++ ++++lG++ W++Ia+ ++ gRt++++k++w++yl
  Cotton_A_35470_BGI-A2_v1.0  68 RGMFTPQEDDVILSLHHLLGNK-WSRIAQSLP-GRTDNEIKNYWHSYL 113
                                 789*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5181062IPR017930Myb domain
SuperFamilySSF466892.93E-2813109IPR009057Homeodomain-like
SMARTSM007178.0E-111464IPR001005SANT/Myb domain
PfamPF002491.7E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-211669IPR009057Homeodomain-like
CDDcd001676.95E-101862No hitNo description
PROSITE profilePS5129425.51363117IPR017930Myb domain
SMARTSM007177.0E-1467115IPR001005SANT/Myb domain
PfamPF002497.5E-1668113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2670117IPR009057Homeodomain-like
CDDcd001673.30E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGCKPSDKPK AKHRKGLWSP EEDLKLKNYV LKHGHLCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGM FTPQEDDVIL SLHHLLGNKW SRIAQSLPGR TDNEIKNYWH SYLKKRIAKV  120
ENLEAQHTSS TSESSVLPQN LTDQSASFVT DQAVPMHFDL PQRSPLPKLL FAEWLSLDKE  180
GGSKPAAYSD GYNQASASSF EDPFMNGFVF NEGGFGTDLQ DLLNDASVNQ LFKFEFQISG  240
NDFIGSGWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-24151177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625709.10.0PREDICTED: transcription factor LAF1-like
TrEMBLA0A0B0NKF40.0A0A0B0NKF4_GOSAR; Transcription factor LAF1-like protein
STRINGEOY231731e-128(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.16e-62myb domain protein 19