PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35654_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 316aa    MW: 35919 Da    PI: 9.5484
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35654_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.6e-181560147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
  Cotton_A_35654_BGI-A2_v1.0 15 RGHWRPAEDEKLRQLVQQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 60
                                899*****************************.***********996 PP
2Myb_DNA-binding60.43.9e-1967110146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  Cotton_A_35654_BGI-A2_v1.0  67 RRPFTEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 110
                                 679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4741061IPR017930Myb domain
SuperFamilySSF466897.11E-3013108IPR009057Homeodomain-like
SMARTSM007171.2E-141463IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-271668IPR009057Homeodomain-like
CDDcd001675.37E-141859No hitNo description
PfamPF139211.9E-171878No hitNo description
PROSITE profilePS5129428.36662116IPR017930Myb domain
SMARTSM007172.4E-1666114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2169115IPR009057Homeodomain-like
CDDcd001676.97E-878109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEDSSDDVKT TSCPRGHWRP AEDEKLRQLV QQYGAQNWNS IAEKLQGRSG KSCRLRWFNQ  60
LDPRINRRPF TEEEEERLLA AHRIHGNKWA LIARLFPGRT DNAVKNHWHV IMARKQREQS  120
KLCGKRSFQD GLIDSKLCFG PRKSRCQEGF SSRFGLGDSR IFEFQNPSKD KIFSVTSSSL  180
TSSPSWTFAS STFMASNNTS LVELSRRNHG LAMGGSYLLD QSLYKYHSNT SAYSSFRNFS  240
VFGLPNYRRV VSSPFGYLGL ENNNDVVKEE SSSFTDNASK LTDIRVASNS HQEQDDDSIK  300
TKDVPFIDFL GVGISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32151157107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5270821e-171HQ527082.1 Gossypium herbaceum clone NBRI_B_1735 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622644.10.0PREDICTED: transcription factor MYB59-like
TrEMBLA0A1U8NWI40.0A0A1U8NWI4_GOSHI; transcription factor MYB59-like
STRINGGorai.013G106600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16592913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.13e-64myb domain protein 52