PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_35670_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 346aa MW: 38871.7 Da PI: 6.1125

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_35670_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.6	9.3e-13	170	216	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+Lq Cotton_A_35670_BGI-A2_v1.0 170 DHVIAERKRREKLSQRFISLSALIPGL-----KKNDKASVLGDAIKYLKQLQ 216 6999*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.983	166	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-10	170	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-15	170	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.29E-16	171	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.95E-12	171	219	No hit	No description
SMART	SM00353	2.1E-13	172	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MEDPTFFPQY PTMNPIDFSF DDFNFESFSP ESYTSYTNID HSHGLHIEAS HNVGGDDFRR 60 PMKQLKTTSS TWKSSCITDN IPPKAASSSS SHIISFDNSN SSPPDISQQY CGLDRDLKRK 120 NEVGSDGNYK GTFPSLISQV AYEDQYCSPK FEQVSKRVGS STRAPLYAQD HVIAERKRRE 180 KLSQRFISLS ALIPGLKKND KASVLGDAIK YLKQLQERVG TLENQVATKT MESVIIVRKT 240 QIYSDDETSS CGENFESQSN NPFPEIEARV SEKDVLIRIH GEKNKGCIPN IINEVEKLHL 300 CVLNTNVLPF GQATLDITIV AQMEADFSMT VKDLVKSLRL ALLNFM

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MEDPTFFPQY PTMNPIDFSF DDFNFESFSP ESYTSYTNID HSHGLHIEAS HNVGGDDFRR  60
PMKQLKTTSS TWKSSCITDN IPPKAASSSS SHIISFDNSN SSPPDISQQY CGLDRDLKRK  120
NEVGSDGNYK GTFPSLISQV AYEDQYCSPK FEQVSKRVGS STRAPLYAQD HVIAERKRRE  180
KLSQRFISLS ALIPGLKKND KASVLGDAIK YLKQLQERVG TLENQVATKT MESVIIVRKT  240
QIYSDDETSS CGENFESQSN NPFPEIEARV SEKDVLIRIH GEKNKGCIPN IINEVEKLHL  300
CVLNTNVLPF GQATLDITIV AQMEADFSMT VKDLVKSLRL ALLNFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	179	ERKRRE
2	175	180	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017629129.1	0.0	PREDICTED: transcription factor bHLH25-like
TrEMBL	A0A1U8P8G7	0.0	A0A1U8P8G7_GOSHI; transcription factor bHLH19-like isoform X1
STRING	Gorai.007G229000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM492	27	146

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	3e-65	bHLH family protein