PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35684_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 177aa    MW: 19819.2 Da    PI: 6.5084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35684_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-18756255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                +y+GVr+++ +g+Wv+eIr+p+    ++r++lg+f tae+Aa a+++a++ + g
  Cotton_A_35684_BGI-A2_v1.0  7 RYRGVRQRH-WGSWVSEIRHPVL---KTRIWLGTFETAEDAATAYDEAARLMCG 56
                                69******9.**********744...5**********************87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.23E-32664No hitNo description
SMARTSM003802.0E-38770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-33764IPR001471AP2/ERF domain
PROSITE profilePS5103220.587764IPR001471AP2/ERF domain
PfamPF008471.9E-10756IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-20765IPR016177DNA-binding domain
PRINTSPR003678.0E-11819IPR001471AP2/ERF domain
PRINTSPR003678.0E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGRPQQRYRG VRQRHWGSWV SEIRHPVLKT RIWLGTFETA EDAATAYDEA ARLMCGAKAR  60
TNFPFNPNDP TSSSKLLSAT LAAKLHKCHM AALQLAKTNA AKESYSAQCH PLTPTHGITG  120
NNAEKGYRRQ PEIKWEAEEN PVGSEQQFIP LEDDDIDQMI EELLDYGSIE LCSSSST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-18868667ATERF1
3gcc_A4e-18868667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645088.11e-133PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW56e-74ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1U8MAL51e-130A0A1U8MAL5_GOSHI; ethylene-responsive transcription factor ERF003-like
STRINGGorai.010G222900.11e-131(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-54ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]