PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35756_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 419aa    MW: 47144.5 Da    PI: 5.1105
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35756_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box292.3e-091661342
                    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                                +r C+ + +k+++++C  ++ +lC+ C ++ H+       H++v+l
  Cotton_A_35756_BGI-A2_v1.0 16 ARACDGCLQKRARWYCAADDAFLCQGCDTSVHSAnqlasrHERVSL 61
                                578*****************************66889999998875 PP
2CCT68.22.2e-23363406144
                         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Cotton_A_35756_BGI-A2_v1.0 363 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 406
                                 9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.7E-111461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6231461IPR000315B-box-type zinc finger
PfamPF006435.0E-81661IPR000315B-box-type zinc finger
CDDcd000216.32E-91761No hitNo description
PfamPF062035.6E-18363405IPR010402CCT domain
PROSITE profilePS5101716.083363405IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MITDKKAANV MGGKTARACD GCLQKRARWY CAADDAFLCQ GCDTSVHSAN QLASRHERVS  60
LQTASSKFNA SMHGTIDQDA PPAWHQGFTR KARTPRQNKP MLGQQKGEGT VLALNPIDPL  120
VPEVGSEEGS VDENEEQLLC RVPVFDPFSE ELFNMVTSDC DEVAMPNEDG NLVVDGYEHE  180
RTCELDDGLH GFLPSDLDLA KFAADVESLL GVRLDEDSRD IKNFESLVCT DENGSELCHE  240
RKRMKVEEGE EVEGITACFC ESAFEVTRAS LNWSFDYDSP TITEEEEQEI PVAKTQRNKL  300
LRLNYESVIT AWASQGSPWT RGTRPELNPD DFMGSYPKDE HHQNGGIGGI NRQARANNTD  360
GEREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRTSFVG LGTAFPYTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373389RRTRLFSKKIRYEVRKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5845342e-91JX584534.1 Gossypium hirsutum clone NBRI_GE17865 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622524.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A2P5XHC10.0A0A2P5XHC1_GOSBA; Uncharacterized protein
STRINGGorai.004G113000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16600813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-91B-box type zinc finger protein with CCT domain