PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_35956_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 149aa MW: 17276.4 Da PI: 10.6213

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_35956_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.7	2.6e-13	67	121	5	59
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++ rr+++NR +ArrsR RK+ +e+L+++vk+L+ +N++L ++l++l+++ l Cotton_A_35956_BGI-A2_v1.0 67 RKRRRMISNRASARRSRMRKRNHLENLTNEVKQLQIQNQELNNRLKSLSDHNHCL 121 5789********************************************9987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.2E-14	58	122	No hit	No description
SMART	SM00338	6.1E-13	63	127	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.415	65	122	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.0E-12	67	123	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.63E-12	67	121	No hit	No description
PROSITE pattern	PS00036	0	70	85	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MLDNDPIPDI ETNIMKWDWS EIFSPGQSTG SARSSGTGSD EAKQSLTGGS TSSLKDPNQR 60 VPTIDERKRR RMISNRASAR RSRMRKRNHL ENLTNEVKQL QIQNQELNNR LKSLSDHNHC 120 LRIDNNRVRF DCSILQQEVL DMRQLLVFR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	70	RKRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017609392.1	1e-106	PREDICTED: bZIP transcription factor 53-like
TrEMBL	A0A1U8I196	1e-103	A0A1U8I196_GOSHI; bZIP transcription factor 53-like
STRING	Gorai.006G054500.1	5e-92	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22417	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	2e-11	basic leucine-zipper 5