PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_36026_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 157aa MW: 18334 Da PI: 10.3297

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_36026_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	65.9	7.5e-21	3	52	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 k Y++C++NhA lGg+a+DGC f+p + + ++C ACgCHRn+HR+ Cotton_A_36026_BGI-A2_v1.0 3 KEIYRDCQRNHARCLGGYAIDGCTQFIPF-----NNSKTHCKACGCHRNYHRKVL 52 678***********************9.....345689**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-9	5	50	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.5E-16	5	51	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.3E-15	6	50	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	20.916	6	51	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.43E-6	84	143	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.3E-14	85	144	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.0E-22	87	144	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MEKEIYRDCQ RNHARCLGGY AIDGCTQFIP FNNSKTHCKA CGCHRNYHRK VLCRDLEQSP 60 NGKSFRSLRE AKRMARQQQS CCGVNMKQRK SKFSMGQREA MREFGEGLGW SMRNKDRPEE 120 INRFCERIGV SRIIFKTWLN NNKKCYFKGT SSANISS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00143	DAP	Transfer from AT1G14687	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017633877.1	1e-114	PREDICTED: zinc-finger homeodomain protein 10-like
TrEMBL	A0A1U8MA23	1e-112	A0A1U8MA23_GOSHI; zinc-finger homeodomain protein 10-like
TrEMBL	A0A2P5WKH2	1e-112	A0A2P5WKH2_GOSBA; Uncharacterized protein
STRING	EOY01272	2e-65	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13728	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14687.1	7e-35	homeobox protein 32