PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36122_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 134aa    MW: 15264.2 Da    PI: 9.505
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36122_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-16856355
                         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                ++G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa a++ a  +l+g
  Cotton_A_36122_BGI-A2_v1.0  8 FRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPIAAACAYDTAVFYLRG 56
                                8****999.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.2E-34770IPR001471AP2/ERF domain
PROSITE profilePS5103221.048764IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-20865IPR016177DNA-binding domain
CDDcd000185.51E-26866No hitNo description
PfamPF008471.4E-9856IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-29865IPR001471AP2/ERF domain
PRINTSPR003671.8E-11819IPR001471AP2/ERF domain
PRINTSPR003671.8E-114666IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MQHHQQPFRG IRMRKWGKWV AEIREPNKRS RIWLGSYSTP IAAACAYDTA VFYLRGPSAR  60
LNFPDLILQE DDELRDISPA SIRKKATEVG AKVVALHTTS LHHHHASNSS ESSNPPRVFS  120
KPDLNKYPET SDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-15864663ATERF1
3gcc_A3e-15864663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641012.11e-97PREDICTED: ethylene-responsive transcription factor RAP2-1-like
SwissprotQ8LC301e-49RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A2P5XBP32e-75A0A2P5XBP3_GOSBA; Uncharacterized protein
STRINGEOY144007e-71(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.17e-48related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]