PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_36412_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 126aa MW: 13838.5 Da PI: 9.9134

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_36412_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	31.6	3.3e-10	97	117	1	21
---SS-EEEEEEE--TT-SS- CS WRKY 1 ldDgynWrKYGqKevkgsefp 21 ldDgy+WrKYG K vk+s+fp Cotton_A_36412_BGI-A2_v1.0 97 LDDGYRWRKYGHKAVKNSKFP 117 59******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-11	82	117	IPR003657	WRKY domain
SuperFamily	SSF118290	1.07E-8	89	118	IPR003657	WRKY domain
PROSITE profile	PS50811	11.382	92	117	IPR003657	WRKY domain
SMART	SM00774	0.0053	97	126	IPR003657	WRKY domain
Pfam	PF03106	1.6E-6	98	117	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MENFQGFFPT SSSSSTSLSL NLTSSLGYSE FECGKDNDGI LGLMADIKVG GATNENNSLV 60 GTTTESEVKI GKTKKGENKK IRKPRYAFQT RSQVDILDDG YRWRKYGHKA VKNSKFPSFS 120 PNPALS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031073	0.0	KF031073.1 Gossypium hirsutum WRKY transcription factor 8 (WRKY8) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016665779.1	1e-81	PREDICTED: probable WRKY transcription factor 75
Refseq	XP_017636437.1	1e-81	PREDICTED: probable WRKY transcription factor 75
Swissprot	Q8VWJ2	5e-18	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A1U8HR27	2e-80	A0A1U8HR27_GOSHI; probable WRKY transcription factor 75
TrEMBL	A0A2P5X7Z3	2e-80	A0A2P5X7Z3_GOSBA; Uncharacterized protein
STRING	Gorai.005G164300.1	3e-63	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM509	28	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	4e-18	WRKY DNA-binding protein 75

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]