PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36436_BGI-A2_v1.0
Common NameF383_23281
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 168aa    MW: 19203.6 Da    PI: 9.7274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36436_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-10650854
                                HHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
                         HLH  8 rErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54
                                +Er+RR +++  +++L +l+P+    +s+   s  + L +A++YIk L
  Cotton_A_36436_BGI-A2_v1.0  6 IERNRRIQMKALYSKLNSLVPHH---SSREaISLPDQLDEATNYIKRL 50
                                8*********************7...55555***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.823150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-4456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-10465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-11565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.31E-5655No hitNo description
PfamPF000102.0E-6650IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDRKFIERNR RIQMKALYSK LNSLVPHHSS REAISLPDQL DEATNYIKRL KANLERMKEM  60
KDGLRGLEER GNTSRSYGSK SPQIQIQEIG SSLAIALNTG FNSQFIFNET IRIVHEERAE  120
VVNANFSVVD DDTVFHTIHL KTGEPSTAAR ISQRLNKFVH DADASNKY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645318.11e-122PREDICTED: transcription factor bHLH36-like
SwissprotF4JIJ74e-41BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A1U8M5W31e-120A0A1U8M5W3_GOSHI; transcription factor bHLH36-like
STRINGGorai.010G154100.11e-114(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-43bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]