PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36459_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 310aa    MW: 34838.1 Da    PI: 6.9356
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36459_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.32.6e-13231256126
                                 --S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                 +ktelC+ +++t  C+yGd C+FaHg
  Cotton_A_36459_BGI-A2_v1.0 231 FKTELCNKWQETAACPYGDHCQFAHG 256
                                 79***********************8 PP
2zf-CCCH17.28.9e-06269293125
                                 --S---SGGGGTS.--TTTTT-SS-S CS
                     zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                                 ykte Cr  ++ G  C+yG rC+F H
  Cotton_A_36459_BGI-A2_v1.0 269 YKTEVCRVILA-GdVCPYGHRCHFRH 293
                                 9******5555.77**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.8E-18225263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-10227262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793230258IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6230257IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10231256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-11264297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8264299IPR000571Zinc finger, CCCH-type
SMARTSM003560.0026268295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.976268296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MQGDGSTLYG DVLAKQPKDK ENEGDYSPSA VAATSLFDLY HPRHVMQQHQ DMINRHNLCL  60
TRLHEASKEV EALRQENTAL RSVNRDLSKQ LSTLIQASMQ NHFATSDYSA TPYELLNEFQ  120
GLCLGSDGGG VGEEEVSDEC PTSMMEGAGD VERVMLPKSI SVRSNGYLKM MSSQNSQNAG  180
VSRRRKYRGP TRSGNASQLS GAVNVWQKVY VQGGKKEEEP LELEVYNQGM FKTELCNKWQ  240
ETAACPYGDH CQFAHGIEEL RPVIRHPRYK TEVCRVILAG DVCPYGHRCH FRHALTEQEK  300
FMGFLKPSTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-21231297470Butyrate response factor 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5774604e-73JX577460.1 Gossypium hirsutum clone NBRI_GE9285 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017604732.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F54e-89C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A2P5WBA30.0A0A2P5WBA3_GOSBA; Uncharacterized protein
STRINGGorai.009G338500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-84C3H family protein