PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36602_BGI-A2_v1.0
Common NameF383_31247
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 684aa    MW: 75923.1 Da    PI: 8.7786
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36602_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-057798223
                                EETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                kC +C++ F ++ n++rHir+H
  Cotton_A_36602_BGI-A2_v1.0 77 KCDKCSREFCSPINYRRHIRVH 98
                                7********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00987698IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.11876103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807899IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0004177Molecular Functionaminopeptidase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MPVAKLKATS SADVMKSEEP NDSLDTFIRQ AIGKEPLLSF SRAGDSSVQW IQLLHALDQQ  60
EIPGWPLLTP LKVQMQKCDK CSREFCSPIN YRRHIRVHHR LKKLDKDSAK NRDLLAAFWG  120
KLSEDEAKEV VSFKDVALEE VPGSSVIKSL TTLVKRPGFS ALPQVCLRAG SALLDLVQAR  180
PSRFPISSQE LFSILDDASE GTFLCGAAVS MQKYIFDGEV GKIGLDTKNL VACTSFLVEQ  240
KLVKAWLADK DAEALRCQKL LVEEEEAAHK RQVELLERKR QKKLRQKEQK AKELRPWEME  300
EGKQNMDDSL EDSTPAETSS PKAVFDIDGQ NAVISTDQVL PALEPIPFPN PEEGVDYRVQ  360
TEFYNRYCES GTSQNGEKRV EQVDGCQRKV VARWKTPPKS QRVVLNGFHA NQNSHGFKSG  420
GTNKHGTNRE RIAAMGNSNK MWSRKPKAID DGDSLQIKAG KQATNQPDQN KNPELIIGSI  480
SVPLGKNLGE THDRCPAECQ PKNNVQERFS KHDHVQIVAN RSTIKFWRPV SRQERKSSLP  540
VQNGIRDVEV EVIAENDGVQ ISSNESYRRS SAVDGSDGVL RMNLSSTLKE SVQPGGLQFD  600
SNAAKAFLAE RWKEAVAGEH VTLVLSSNPK PPGCSGVEID SSEKWMVKAG ACEASTVGAA  660
IAKYRTKPEK GAKTKYIPKQ RSAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276283ERKRQKKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5881042e-52JX588104.1 Gossypium hirsutum clone NBRI_GE22433 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017631934.10.0PREDICTED: uncharacterized protein LOC108474501 isoform X1
TrEMBLA0A1U8NJ720.0A0A1U8NJ72_GOSHI; uncharacterized protein LOC107948966 isoform X1
STRINGGorai.004G117900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-161C2H2-like zinc finger protein