PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_36642_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 238aa MW: 26708.6 Da PI: 10.835

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_36642_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.8	6.8e-30	95	148	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk++tl+hvkS LQ+YR+ Cotton_A_36642_BGI-A2_v1.0 95 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDITLAHVKSQLQMYRT 148 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.84E-14	92	149	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-26	93	149	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.8E-21	95	148	IPR006447	Myb domain, plants
Pfam	PF00249	7.1E-6	96	147	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MRTIPFPDLS LQISPTSISV CRVKGMTYYR SSTTDSSCSG ANLSQGQPRL SLGFETAVLS 60 QSQPKLNHHQ PQIYGREFKR NARMINGVKR RMRAPRMRWT TTLHAHFVHA VQLLGGHERA 120 TPKSVLELMN VKDITLAHVK SQLQMYRTVK STDKGSANLQ TSPQRTQSDP WLSSMETNNL 180 IISGHGNSFT FKSNDAKVKV DKAELQVSNR LKDRLDSNSL SPSHMLLNLE FTLGMPLC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-15	96	150	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-15	96	150	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-15	96	150	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-15	96	150	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-15	96	150	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-15	96	150	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-15	96	150	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-15	96	150	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-15	96	150	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-15	96	150	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-15	96	150	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-15	96	150	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP283472	2e-71	KP283472.1 Prunus armeniaca aberrant testa shape (ATS) gene, complete cds.
GenBank	KP283473	2e-71	KP283473.1 Prunus incisa isolate 462-2010A aberrant testa shape (ATS) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017625086.1	1e-175	PREDICTED: probable transcription factor KAN4
TrEMBL	A0A0D2SEB1	1e-154	A0A0D2SEB1_GOSRA; Uncharacterized protein
STRING	Gorai.005G105600.1	1e-155	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6572	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	2e-52	G2-like family protein