PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36688_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 189aa    MW: 21831.2 Da    PI: 6.7313
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36688_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.41.4e-2393156159
                                 ---SS-EEEEEEE-.....-TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKe.....vkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                 +dDgy+WrKYG+K+       + e  r+YY+C+s+gC+vkk+ver++edp++v++tY g+Hnhe
  Cotton_A_36688_BGI-A2_v1.0  93 MDDGYRWRKYGKKKwienlADDGEKCRNYYQCSSEGCKVKKRVEREREDPRFVITTYVGKHNHE 156
                                 59**********9832222345689**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-2781157IPR003657WRKY domain
SuperFamilySSF1182909.42E-2285157IPR003657WRKY domain
PROSITE profilePS5081123.46888158IPR003657WRKY domain
SMARTSM007748.5E-2193157IPR003657WRKY domain
PfamPF031062.0E-1894156IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEITSHTHHL HLDDHFLVDP EQYNCKETTT FTSSHMKTSA YGSCWEVPGC NSFAYQYMQP  60
NYDDKGSANT ADINGDDLRL KIAFRTKSDI EIMDDGYRWR KYGKKKWIEN LADDGEKCRN  120
YYQCSSEGCK VKKRVERERE DPRFVITTYV GKHNHETLSP SSLSSAFDIS PSSHSTTLLP  180
HTLQILHQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-1983156775Probable WRKY transcription factor 4
2lex_A4e-1983156775Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698041e-149KF669804.1 Gossypium hirsutum WRKY transcription factor 113 (WRKY113) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645345.11e-120PREDICTED: probable WRKY transcription factor 50
TrEMBLA0A2P5XD191e-118A0A2P5XD19_GOSBA; Uncharacterized protein
STRINGGorai.010G131300.11e-103(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2850533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.14e-30WRKY DNA-binding protein 51