PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36849_BGI-A2_v1.0
Common NameF383_13265
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 249aa    MW: 28171.7 Da    PI: 9.126
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36849_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.6e-08135182455
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 +h+ +Er RR +iN+++  L++++P +    ++ +  a +L + ++Y++sLq
  Cotton_A_36849_BGI-A2_v1.0 135 SHSLAERVRRGKINERLRCLQDIVPGC----HRTMGMAVMLDEIINYVQSLQ 182
                                 8*************************9....889999*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.74E-7129186No hitNo description
SuperFamilySSF474592.49E-16129199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-16131193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.996131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5135182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-8137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MESLNHFTEL NPRLLDNSVM NYQSFLPSSI DNFFSQAQAI PGHEGGNLQS SASVFQPLLT  60
AKTELIHESK KRKALDVSKS SSFGNSLSSP QVSETEVKRR NDSGRGKRAK RNEKEEEKPK  120
DVVHVRARRG QATDSHSLAE RVRRGKINER LRCLQDIVPG CHRTMGMAVM LDEIINYVQS  180
LQNQIEFLSM KLTAASTYYD FNSEPDALER MQREKAQEAK ELERLMKERY VGGLACFHSS  240
SSSTWSSLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197110KRRNDSGRGKRAKR
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610492.10.0PREDICTED: transcription factor BEE 1-like
SwissprotQ8GWK77e-64BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A0B0MDZ70.0A0A0B0MDZ7_GOSAR; Transcription factor BEE 1-like protein
STRINGGorai.006G060400.11e-164(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.12e-60BR enhanced expression 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]