PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36884_BGI-A2_v1.0
Common NameF383_32453
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 239aa    MW: 25649.4 Da    PI: 8.6122
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36884_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26086.63.5e-274107199
                      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                                 +C++C+vlr++C+++C+++p++     +++q++++ +++k++G++ +++l+   p++ r+ +++sl+yeA+ r+ dPv+G+vg
  Cotton_A_36884_BGI-A2_v1.0   4 SCNGCRVLRKGCTESCTIRPCLqwipsAQSQANATLFLAKFYGRAGLINLICGGPQNLRPGVFKSLLYEACGRIVDPVHGSVG 86 
                                 6*********************9996555778*************************************************** PP

                      DUF260  79 vilklqqqleqlkaelallke 99 
                                 ++ +++++l++++++++l ++
  Cotton_A_36884_BGI-A2_v1.0  87 LMCSGNWHLCEAAVDAVLNGA 107
                                 *************99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.7183109IPR004883Lateral organ boundaries, LOB
PfamPF031959.7E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCTESCT IRPCLQWIPS AQSQANATLF LAKFYGRAGL INLICGGPQN  60
LRPGVFKSLL YEACGRIVDP VHGSVGLMCS GNWHLCEAAV DAVLNGAPIK QVPSELSATK  120
CPPLKSSFDI RHVSKDKKSN DGLRKVKSRG RFKRSASKPK PKLEEVVFEP VSKGGDSWEG  180
DCLSVETVEG SLAKGDELGD GSDLELELTL GLEPRTKNRG NNINGRGDAT CGGRVEGLC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610065.11e-174PREDICTED: LOB domain-containing protein 40-like isoform X2
SwissprotQ9CA301e-66LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A0B0MZS21e-173A0A0B0MZS2_GOSAR; LOB domain-containing 42-like protein
STRINGGorai.006G061200.11e-154(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1802789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.17e-69LOB domain-containing protein 42