PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_37514_BGI-A2_v1.0
Common NameF383_14211
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 314aa    MW: 34848.9 Da    PI: 6.4062
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_37514_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.5e-13113164155
                                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Cotton_A_37514_BGI-A2_v1.0 113 QRMTHIAVERNRRRQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 164
                                 79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.62E-11111165No hitNo description
Gene3DG3DSA:4.10.280.108.8E-14111168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16112182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-9118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MALEAVVFQQ DLFGYNSKDL YSLLGGNLSY EDIHFPHHNQ TSDEANNNFV NGGDSYWVSS  60
SSSPTSMAPP PPPDEATNNN VNGSSSSALD TSTSRPKRRR LKTRKNKEEI ENQRMTHIAV  120
ERNRRRQMNE YLSVLRSLMP ESYVQRGDQA SIIGGAINFV KELEHCVQLL SAKKETKERP  180
NGSNSGCSSP FGEFFTFPQY STSSTRGDNN SIPMNESMVE TRSAIADIEV TMVESHANLK  240
IRSKKGPAQL LKLVSGLNSM RLNILHLNVT TVDQTVLYSL SVKVEDDCKL TSVDDIATAV  300
NQLLGRIQEE AVLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196100KRRRL
2113124RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612333e-34GQ261233.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI018 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618391.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9SK912e-83BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A0B0Q1180.0A0A0B0Q118_GOSAR; Transcription factor bHLH94-like protein
STRINGGorai.007G294800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-82bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]