PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_37800_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 214aa    MW: 24200.5 Da    PI: 10.0904
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_37800_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-057092123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                + C++C+k F r  nL+ H r H
  Cotton_A_37800_BGI-A2_v1.0 70 FMCEICNKGFQRDQNLQLHRRGH 92
                                89*******************88 PP
2zf-C2H214.50.0001147169123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 +kC++C+k++  +s+ k H + +
  Cotton_A_37800_BGI-A2_v1.0 147 WKCEKCSKTYAVQSDWKAHSKIC 169
                                 58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-76992No hitNo description
Gene3DG3DSA:3.30.160.607.1E-66992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121712.1E-57092IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.997092IPR007087Zinc finger, C2H2
SMARTSM003550.0317092IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355240112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.39E-7142167No hitNo description
SMARTSM00355110147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDESMSNLTS TSGEFSASSG TVLYPPQQSF ASTNQAPAAA KKKRNLPGNP DPDAEVIALS  60
PKTLLATNRF MCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTNKEVVRKK VYVCPETTCV  120
HHDPARALGD LTGIKKHFCR KHGEKKWKCE KCSKTYAVQS DWKAHSKICG TREYRCDCGT  180
LFSSKRVVAS WSTIFRKGFE KQYSNGQREQ ENGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-21143185345Zinc finger protein JACKDAW
5b3h_F4e-21143185345Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196109KLKQRTNKEVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635510.11e-136PREDICTED: protein indeterminate-domain 7-like
SwissprotQ9LRW72e-98IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A0D2U9N21e-134A0A0D2U9N2_GOSRA; Uncharacterized protein
STRINGGorai.010G099600.11e-135(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-101indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]