 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Cotton_A_37983_BGI-A2_v1.0 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
| Family | G2-like | ||||||||
| Protein Properties | Length: 555aa MW: 59249.6 Da PI: 4.2327 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 92.4 | 3.7e-29 | 105 | 159 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kprlrWt+eLH+ Fve+ ++LGG+++AtPk++l+lm+++gL l hvkSHLQkYRl
Cotton_A_37983_BGI-A2_v1.0 105 KPRLRWTSELHSYFVEVCNRLGGPQRATPKAVLDLMDIDGLNLFHVKSHLQKYRL 159
79****************************************************8 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 1.4E-25 | 103 | 159 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 3.94E-14 | 105 | 159 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 9.3E-21 | 105 | 160 | IPR006447 | Myb domain, plants |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 555 aa Download sequence Send to blast |
MGEILSELNS VSVENNVVSQ NSDEFKVSVF GEQVLAGQGV HVNGHNQHDQ QLHQGGGNNN 60 TLLALQEIPG NLPPFTVSNG DPVFGNEVVE RVREKPKLIV TNDIKPRLRW TSELHSYFVE 120 VCNRLGGPQR ATPKAVLDLM DIDGLNLFHV KSHLQKYRLG KYADKDSTEG GQTGTFGSSS 180 SAIPLPLCTN QYNSLTCSQM SIQDMGAKKL EAERNVQRCL EEQRRYLQTA LERACKTLAN 240 QYLGDAAAVE NAILYGQASA GLGNFATIPV GPSGFGTSAT RVPPFYSEQQ NAYPTYNNTL 300 TTPANLGLQE QPVGYQLQTS FSPAPQGNIS TSNGYSGSSP HQETLAAAAA YTDWLVDEDL 360 IQTSFSPATQ GNISTSNGYS GSSPHQETSA AAAADTDWLV DEDLIQTSFS PAPQGNISTS 420 NGYSGSSPHQ ETSAAAAANM DRPVDKDLIQ TSFSPAPQGN ISTSNGYSGS SPHQETSAAA 480 AADTDWPVDE DLIQTSFSPA PQGNISTSNG YSGSAPHQET SAAAAADIDW PVDEDLIQAF 540 FNWDDNEPMN LDASL |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 2e-20 | 105 | 162 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 2e-20 | 105 | 162 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 2e-20 | 105 | 162 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 2e-20 | 105 | 162 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 2e-20 | 105 | 162 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 2e-20 | 105 | 162 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 2e-20 | 105 | 162 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 2e-20 | 105 | 162 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 2e-20 | 105 | 162 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 2e-20 | 105 | 162 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 2e-20 | 105 | 162 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 2e-20 | 105 | 162 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_017634379.1 | 0.0 | PREDICTED: uncharacterized protein LOC108476618 | ||||
| TrEMBL | A0A0D2NCU6 | 0.0 | A0A0D2NCU6_GOSRA; Uncharacterized protein | ||||
| STRING | Gorai.001G225500.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM21949 | 5 | 5 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G79430.2 | 1e-31 | G2-like family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|