PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38065_BGI-A2_v1.0
Common NameF383_29027
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 413aa    MW: 46225.1 Da    PI: 4.5421
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38065_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.14.2e-091659340
                    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                                +r C+ + +k+++++C  ++ +lC+ C ++ H+       Ht+v
  Cotton_A_38065_BGI-A2_v1.0 16 ARACDGCLRKRARWYCSADDAFLCQGCDTSVHSAnqlasrHTRV 59
                                578*****************************668899999987 PP
2CCT60.17.6e-21360397138
                         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKG 38 
                                 Rea+++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KG
  Cotton_A_38065_BGI-A2_v1.0 360 REARVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRIKG 397
                                 9************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.6E-111461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5091461IPR000315B-box-type zinc finger
PfamPF006431.8E-71659IPR000315B-box-type zinc finger
CDDcd000211.15E-91761No hitNo description
PROSITE profilePS5101714.257360402IPR010402CCT domain
PfamPF062032.8E-15360397IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MISDKRAANA MGGKTARACD GCLRKRARWY CSADDAFLCQ GCDTSVHSAN QLASRHTRVR  60
LETASSRFNA SVINNSATDQ DALPAWHQGF TRKARTPRQN RSIQGQQKSD GKVWDLNPLV  120
PEVGCEDGSA EETEDQLLCR VPVFDPFSAE LRDMANENGN LVVDGFEDEG TCQLDDGLHG  180
FLPSDLDLAQ FAADVESLLG DGLDENNTCN HTKGTELMDC KQEDESNAFQ ERKIKDEEEE  240
EEGIITACCF DSDFDVTRSS LNWSFDYESP TIGDQEEEEK VVPVAETPIM DGEIKAEKKR  300
SMLLRLDYES VITAWATQGS PWTSGTRPEF NPDDFMGSNP NEGIGGICSQ GKRNITDGER  360
EARVSRYREK RRTRLFSKKI RYQVRKLNAE KRPRIKGSTA DILLLMVEGY DLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370386RRTRLFSKKIRYQVRKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5834525e-67JX583452.1 Gossypium hirsutum clone NBRI_GE16495 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609065.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A0B0MUN70.0A0A0B0MUN7_GOSAR; Zinc finger CONSTANS-LIKE 16-like protein
STRINGGorai.006G061600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16600813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.16e-91B-box type zinc finger protein with CCT domain