PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38079_BGI-A2_v1.0
Common NameF383_12760
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 607aa    MW: 68066 Da    PI: 10.2043
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38079_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.5e-101143336
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
             Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36
                                +W t E++llv+av+++G+++W++Ia++++ +R 
  Cotton_A_38079_BGI-A2_v1.0 11 PWGTLEELLLVCAVNRHGTKSWDSIASELQ-NRR 43
                                7*****************************.875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.377465IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.0E-6762IPR009057Homeodomain-like
SMARTSM007174.9E-6867IPR001005SANT/Myb domain
SuperFamilySSF466894.84E-61067IPR009057Homeodomain-like
CDDcd001676.71E-61165No hitNo description
PfamPF002491.0E-81142IPR001005SANT/Myb domain
SMARTSM002975.2E-10271380IPR001487Bromodomain
SuperFamilySSF473705.63E-14283383IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.0E-12305395IPR001487Bromodomain
PfamPF004391.6E-6306364IPR001487Bromodomain
CDDcd043695.50E-12310375No hitNo description
PROSITE profilePS5001410.401310361IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MAGENKSSAR PWGTLEELLL VCAVNRHGTK SWDSIASELQ NRRLTSSFLP SFTPQLCKDK  60
FFDLKRRFMS TNGASSSSSL VDQLRRIRVE ELRREVQERD VSIVSLELKV KRLEEERERS  120
SKEETDLDDR QNILSPDTVA GTPAGGDGSG DLDDRSFNES NSTSQKPELT TLATIIIKDE  180
QNDAGEVVGE RKAQVITEPI EPRGENEIDP VRTGEGPVNE RLNGEEHDNK KQVSDVQSSA  240
SLSKKKRCNG SSKGGSTSRE EREGDEVSPA MKRAPAVKPE SMVRLLGIIR SHRLGSALDR  300
RQRSQESARY KNLIRQHMDL QRIQTRLDKG VYSECSTKFL RDLLLLFNNL IVFHHKSSPE  360
RIAAQQLRAL VLKEMTHMLP KQSETDDVAK PNKSSTIVAC GKRRSSKAVT KNTSTSTRRG  420
DEKERGVEEK KFDGSCPIAT DDMGIRKKRS KERVVSGRRN LLRTSSTSEE TKHEYGGNEL  480
SSHDAVEKKV DIKKENSNHN KNNKARKKQG AASFLKRMKQ NSPREVMEKD EDDDEDDDSE  540
DHSKDEKEKG RVERVTRSSG GRGARAKRGV GRPPKVVAES TGKRGRDNVE NEVGLGGTGR  600
ARKRGRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614170.10.0PREDICTED: uncharacterized protein LOC108459325
TrEMBLA0A0B0PYE90.0A0A0B0PYE9_GOSAR; Pre-mrna-splicing factor cef1
STRINGGorai.010G127900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1708978
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.11e-18DNA-binding bromodomain-containing protein