PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38191_BGI-A2_v1.0
Common NameF383_29270
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27771.6 Da    PI: 6.1536
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38191_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.82.1e-31959151
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gklye++s
  Cotton_A_38191_BGI-A2_v1.0  9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCS 59
                                79***********************************************96 PP
2K-box95.49.2e-32821739100
                       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                                 ++e +a+s +qe+ kLk+++e Lq++qRh+lGe++ +L  keL+qLe+qL+ slkkiRs+K++l+++q++elq ke+ l e+n
  Cotton_A_38191_BGI-A2_v1.0  82 QTEIDAQSNYQEYLKLKSKVEVLQQSQRHFLGEEIADLGTKELEQLEHQLDFSLKKIRSTKMQLMIDQLSELQTKEEVLLETN 164
                                 5677899**************************************************************************** PP

                       K-box  92 kaLrkklee 100
                                 ++Lr+kl+e
  Cotton_A_38191_BGI-A2_v1.0 165 RNLRMKLDE 173
                                 ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.347161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-33284IPR002100Transcription factor, MADS-box
CDDcd002658.39E-43278No hitNo description
PRINTSPR004041.2E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-323859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2686171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.18887177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0048440Biological Processcarpel development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048443Biological Processstamen development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLYEFCST  60
SSMAKTLEKY NSYTYGALEP AQTEIDAQSN YQEYLKLKSK VEVLQQSQRH FLGEEIADLG  120
TKELEQLEHQ LDFSLKKIRS TKMQLMIDQL SELQTKEEVL LETNRNLRMK LDESGPSMRS  180
SWETGEQSIP YNHPPPPPQS EGFFEPLHCN NSLQIGYNPS SVTVEDTATA SALAPSGFIP  240
GWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A7e-25751711101Developmental protein SEPALLATA 3
4ox0_B7e-25751711101Developmental protein SEPALLATA 3
4ox0_C7e-25751711101Developmental protein SEPALLATA 3
4ox0_D7e-25751711101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00030SELEXTransfer from AT2G03710Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364340.0HM236434.1 Gossypium hirsutum MADS18 mRNA, complete cds.
GenBankJF2718850.0JF271885.1 Gossypium hirsutum SEPALLATA2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016674389.10.0PREDICTED: MADS-box protein CMB1-like
RefseqXP_017618640.10.0PREDICTED: MADS-box protein CMB1-like
SwissprotQ8LLR21e-108MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A0B0MXY50.0A0A0B0MXY5_GOSAR; MADS-box CMB1
TrEMBLA0A1U8IEY90.0A0A1U8IEY9_GOSHI; MADS-box protein CMB1-like
TrEMBLA0A2P5YKT00.0A0A2P5YKT0_GOSBA; Uncharacterized protein
STRINGGorai.013G096000.11e-178(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71352440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.22e-99MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]