PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38270_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 1341aa    MW: 147222 Da    PI: 5.388
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38270_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.86.1e-0613181341226
                                  -S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                                  ++++C+ f+++G+Ck G++C++ H+
  Cotton_A_38270_BGI-A2_v1.0 1318 GQRICK-FYESGYCKKGASCRYWHP 1341
                                  6899**.8899***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579038.64E-849117IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.9E-964124IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.52969135IPR019787Zinc finger, PHD-finger
CDDcd155689.60E-1971116No hitNo description
SMARTSM002496.7E-771117IPR001965Zinc finger, PHD-type
PROSITE patternPS01359072132IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.101.5E-23264344IPR003121SWIB/MDM2 domain
SuperFamilySSF475921.16E-19264340IPR003121SWIB/MDM2 domain
PfamPF022011.7E-14281339IPR003121SWIB/MDM2 domain
SMARTSM001510.004282344IPR019835SWIB domain
SMARTSM007193.5E-42401510IPR004343Plus-3 domain
PROSITE profilePS5136023.943401533IPR004343Plus-3 domain
SuperFamilySSF1590422.09E-30402530IPR004343Plus-3 domain
PfamPF031267.7E-23406508IPR004343Plus-3 domain
SuperFamilySSF552773.53E-16675734IPR003169GYF domain
PROSITE profilePS5082914.959678732IPR003169GYF domain
CDDcd000722.92E-16678735No hitNo description
SMARTSM004443.0E-15679734IPR003169GYF domain
PfamPF022136.5E-12680724IPR003169GYF domain
Gene3DG3DSA:3.30.1490.402.4E-18680734IPR003169GYF domain
PROSITE profilePS5010315.08413161341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.98E-613161340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1341 aa     Download sequence    Send to blast
MDNSQLVGNA DVVVPGAAGA TAEAGNGVTV VEMSAGKRRR GRPPRNQVRT PSSSAPPPPP  60
QRKDEDDEED VCFICFDGGS LVLCDRRGCP KAYHPACIKR DEAFFKSKAK WNCGWHICST  120
CQKASYYMCY TCTYSLCKNC TKDADYVNVQ VDFDDKTSWE YLFKVYWVLL KEKLALSLDE  180
LTNAKNPWKE TAIMGPKGNS SGELNNYSNA KGTNMEKSCG DQGDSYSKRR KTTRQQKLLN  240
NVEYLGAENS GVMKGVPFPG GTNWATTELL EFVAHMKNGD VSVLSHFDVQ ALLLEYITRN  300
NLRDPRQKSH IICDSRLVKL FGEERVGHFE MLKLLESHFL IQDHSRAIDT VRGEAIEAAA  360
IQLAVDGNSD SQPIIASDKR RKTRKKVNEK GQRANPDEYA AVDVHNMNLI YLKRNWIENL  420
IDDAEKIDGK VVGSFVRIKI PGNDQKQDFY RLVQVVGTSK AEPYKIGERT TDIMLEILNL  480
DKKEAVSING ISNQEFTEDE CQRLYQRIRC GLTKWFTVGE ILEKAMALQA VRVNDWLQSE  540
ILRVTNLRDR ASEKGHMKEY PMLLDMMLTF RLFFILECIE KLQLLNSPDE RQRRLQEIPD  600
IHCDPDMSQY CKSLKVAVEL NKKKENNKPR DSGFTMKEKE PAFPLKGSDD LNDIGSRGTS  660
LGPHSTGMEL TVNNIETDKI WHYQDPHGKV QGPFHIEMLR RWSMSGHFPP DLRIWRANEK  720
QDNSILLTDA LDGWYGEAKQ SFCNSCVPTE DIRVASDDGC LSGAVDGSGG TDLNVAQIES  780
KQVEGTLNST LNDTSSHYCG NNESVKSTEL SSQSSPCSAT CTPVVDVVNS DAVQKGSPLP  840
TCDLVKGDND LPGLPQVSSS LPSSTLSDKP CGTQSHQFNN DHGVERWDNG SINMGENMDK  900
TSEGQNIAGS AKLDDSEGKS GRSSGQSWRS SPLNDASNGW DSNSGLISLA RALEASEHNQ  960
DIDFSDIPTS TSKLNQEDSK GQANESKLSL SLNVPHRDSG PSWSTTSSLV GNSQIAEIVG  1020
EWGGHSSTPA KPSAKGWDSN LVPESSFKPS IMGSDHAAAP TSGSDQLTHS SPPDPANNAF  1080
AWDPIVPEPN EGDESVSDLL AEVEAMESLN GLTSPTSIMR CDGELAQGSE PDCFSPVGRL  1140
SPAPDPGKSD SFSSTNDLQM PSQSTVTTEP FRISQSEVLD AQKSSGRHSS TSAEINENTR  1200
PRDVSVNQYK VGSNMQPPAP PVTTWGMDTI DTAWGSGPET TSTNCGAVHG NKNFSWRGLG  1260
EGNTNVSRGT GQGTFQENSS INAGTSGENL AHWGSQQRHS SYYGGSNGGG TFRSPPKGQR  1320
ICKFYESGYC KKGASCRYWH P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A3e-13691391582Histone-lysine N-methyltransferase NSD3
4gnd_C3e-13691391582Histone-lysine N-methyltransferase NSD3
4gne_A3e-13691391582Histone-lysine N-methyltransferase NSD3
4gnf_A3e-13691391582Histone-lysine N-methyltransferase NSD3
4gng_A3e-13691391582Histone-lysine N-methyltransferase NSD3
4gng_D3e-13691391582Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017630781.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
RefseqXP_017630782.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A0D2SGM00.0A0A0D2SGM0_GOSRA; Uncharacterized protein
STRINGGorai.007G197200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding