PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38285_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 108aa    MW: 12256.5 Da    PI: 9.8111
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38285_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.1e-27958150
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ v+ifs +gklye +
  Cotton_A_38285_BGI-A2_v1.0  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVVIFSAHGKLYELA 58
                                79*********************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.249161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-29175IPR002100Transcription factor, MADS-box
SMARTSM004329.0E-36160IPR002100Transcription factor, MADS-box
CDDcd002658.92E-42276No hitNo description
PRINTSPR004041.5E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.2E-241056IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MGRGRVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVVIFSA HGKLYELATK  60
GTMQELIERY GKYTGGPPAD EPMVEPMDAK KEIEMLKQEI EILQKGLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-19190191MEF2C
5f28_B5e-19190191MEF2C
5f28_C5e-19190191MEF2C
5f28_D5e-19190191MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5189142e-63DQ518914.1 Populus tomentosa MADS box transcription factor (MADS2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016742779.11e-73PREDICTED: agamous-like MADS-box protein AGL12 isoform X2
SwissprotA2YQK98e-48MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G88e-48MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A1U8NXR83e-72A0A1U8NXR8_GOSHI; agamous-like MADS-box protein AGL12 isoform X2
TrEMBLA0A2P5YFF03e-72A0A2P5YFF0_GOSBA; Uncharacterized protein
STRINGGorai.013G135200.17e-72(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70522641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.11e-48AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]