PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38441_BGI-A2_v1.0
Common NameF383_27269
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 219aa    MW: 24257.9 Da    PI: 9.0294
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38441_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26085.67.2e-2721061100
                      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                                 +C++C+vlr++ +++C+++p++     p++q++++ +++k++G + +l+l++a pe+ r++++ sl+yeA+ r+ +PvyG+vg
  Cotton_A_38441_BGI-A2_v1.0   2 SCNGCRVLRKGYSQNCIIRPCLqwiksPDSQANATLFLAKFYGLAGLLNLIEAGPENLRPAIFMSLLYEACGRVVNPVYGSVG 84 
                                 6********************************************************************************** PP

                      DUF260  79 vilklqqqleqlkaelallkee 100
                                 ++++ ++  +q++++++l +++
  Cotton_A_38441_BGI-A2_v1.0  85 MLWSRNWVECQAAVDAVLKGSQ 106
                                 *************999988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.521107IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-21299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSCNGCRVLR KGYSQNCIIR PCLQWIKSPD SQANATLFLA KFYGLAGLLN LIEAGPENLR  60
PAIFMSLLYE ACGRVVNPVY GSVGMLWSRN WVECQAAVDA VLKGSQITET SSSESLTQQS  120
ISPLKTYDIR HVFKDPNTTD IDKVKSRNSF KRSATKSKRH VDSKEDESMF SVETQEGSLV  180
TQTKKGPLLK LGNQTVEIAD IRLELTLGLA PATMQLPRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5855617e-74JX585561.1 Gossypium hirsutum clone NBRI_GE19169 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610210.11e-163PREDICTED: LOB domain-containing protein 42-like
SwissprotQ9CA303e-72LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A0B0MSE11e-160A0A0B0MSE1_GOSAR; LOB domain-containing 41-like protein
STRINGGorai.002G217800.11e-155(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-68LOB domain-containing protein 41