PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_38800_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 882aa MW: 102167 Da PI: 6.7053

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_38800_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.9	9.5e-25	75	161	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fYn+YA+ GFsvrk+ ++sk +g++++r+f+Cskeg+r++++ + + +++r+etrtgC a++ ++++ +gk++v+++e Cotton_A_38800_BGI-A2_v1.0 75 RFYNKYARLSGFSVRKDWINRSKIHGQVVSRKFTCSKEGYRRKDQGD-VIVKKHRKETRTGCLAHMIITRKLNGKYRVSHFEA 156 5*****************************************999.9999*************************** PP FAR1 84 eHnHe 88 +HnH+ Cotton_A_38800_BGI-A2_v1.0 157 NHNHD 161 **6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.8E-23	75	161	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.5E-22	283	377	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.299	563	599	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.0E-6	574	601	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	4.0E-4	576	599	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence Send to blast
MNKDDDDLGG PHEEDPDNRA RTSDQLDLNV EQECRRPKVN HVDSTHSNLP SKVETNADGV 60 LRVGVEFESD EHAYRFYNKY ARLSGFSVRK DWINRSKIHG QVVSRKFTCS KEGYRRKDQG 120 DVIVKKHRKE TRTGCLAHMI ITRKLNGKYR VSHFEANHNH DNITPYNGRA LQLQKDPCFV 180 HASETEQPNN LETQNPAFDL TSKILVRESL DCLTVDYVNH LRSERVRDMK EGEAGCLLHY 240 FQKQHFENPS FFYAIQLDIN DRVSNIFWTD DNMVVDYNYF GDVVLLDMRF RTNKDYKPFV 300 QFIGVNHHNH ALIFSAALLY DDTVESLKWL FHTFLEAMSG KKPKVILTDQ DATVVEAVGS 360 ILPETDHHIC VYQMHQNTLK HLSHIVKDAD AFSNDFRSCI YDHNDEDDFI HAWEAMLDKY 420 NLKQNEWLRW MYREKEKWAV VYGKNRFFID MKCSHLGESL SNKLRSYLNA DQDVLQFFKH 480 FERVMDEQRH KEIKATHKMS HCKPELMGNV ILLKHASEIY TPKAFEVFQH EYEQCLNVVA 540 NQCSQNGYLS EYKVNTFGKS QEYIVTFDSS DDSVICSCMK FEYVGFLCSH ALRVLDHRNI 600 KVVPSRYILR RWTKDARIGC AQDDSDFIIQ ENPKLVAARR YRDMCRSILN LSARAAESYD 660 AFHFASRQLN ETIKGVEKIL AQKAEDAQVI ASSSSAASAS DSENVEIFLD GNAIDDQEKS 720 CRRQSKKENE ATERHRHKQK SILQRGLKNR RIQNEGSNSP NTITCISSSS PANVSPQASV 780 SAPVMQRLFN FEANQVVQCV DQESNLGIEQ TPHAEVYQNP NFYTDQHGSP NQTQLLQDER 840 LIHGTYHDSV SNCCQLRQAM ELDIQPSHSS SFLLYDDRDR TY

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence Send to blast

MNKDDDDLGG PHEEDPDNRA RTSDQLDLNV EQECRRPKVN HVDSTHSNLP SKVETNADGV  60
LRVGVEFESD EHAYRFYNKY ARLSGFSVRK DWINRSKIHG QVVSRKFTCS KEGYRRKDQG  120
DVIVKKHRKE TRTGCLAHMI ITRKLNGKYR VSHFEANHNH DNITPYNGRA LQLQKDPCFV  180
HASETEQPNN LETQNPAFDL TSKILVRESL DCLTVDYVNH LRSERVRDMK EGEAGCLLHY  240
FQKQHFENPS FFYAIQLDIN DRVSNIFWTD DNMVVDYNYF GDVVLLDMRF RTNKDYKPFV  300
QFIGVNHHNH ALIFSAALLY DDTVESLKWL FHTFLEAMSG KKPKVILTDQ DATVVEAVGS  360
ILPETDHHIC VYQMHQNTLK HLSHIVKDAD AFSNDFRSCI YDHNDEDDFI HAWEAMLDKY  420
NLKQNEWLRW MYREKEKWAV VYGKNRFFID MKCSHLGESL SNKLRSYLNA DQDVLQFFKH  480
FERVMDEQRH KEIKATHKMS HCKPELMGNV ILLKHASEIY TPKAFEVFQH EYEQCLNVVA  540
NQCSQNGYLS EYKVNTFGKS QEYIVTFDSS DDSVICSCMK FEYVGFLCSH ALRVLDHRNI  600
KVVPSRYILR RWTKDARIGC AQDDSDFIIQ ENPKLVAARR YRDMCRSILN LSARAAESYD  660
AFHFASRQLN ETIKGVEKIL AQKAEDAQVI ASSSSAASAS DSENVEIFLD GNAIDDQEKS  720
CRRQSKKENE ATERHRHKQK SILQRGLKNR RIQNEGSNSP NTITCISSSS PANVSPQASV  780
SAPVMQRLFN FEANQVVQCV DQESNLGIEQ TPHAEVYQNP NFYTDQHGSP NQTQLLQDER  840
LIHGTYHDSV SNCCQLRQAM ELDIQPSHSS SFLLYDDRDR TY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017631869.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A1U8MMT5	0.0	A0A1U8MMT5_GOSHI; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRING	Gorai.006G047000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-111	FAR1-related sequence 5