PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38801_BGI-A2_v1.0
Common NameF383_33143
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 232aa    MW: 25364.9 Da    PI: 8.2642
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38801_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.33.7e-312103197
                      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                                 +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg
  Cotton_A_38801_BGI-A2_v1.0   2 SCNGCRVLRKGCSESCILRPCLqwidgPEAQGHATIFVAKFFGRAGLMSFISAVPESQRSALFQSLLFEACGRTVNPVNGAVG 84 
                                 6********************************************************************************** PP

                      DUF260  79 vilklqqqleqlkaelall 97 
                                 ++++++++++q+++e++l+
  Cotton_A_38801_BGI-A2_v1.0  85 LLWTGNWHVCQAAVETVLR 103
                                 *************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.2211107IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDGPE AQGHATIFVA KFFGRAGLMS FISAVPESQR  60
SALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTVRAV PELMAPTPAS  120
DEKSEATTIT YMLKLQETAT KFNSTCRFST SRSKVSPKRI KVEEFSKFQP SDLDLCLTPS  180
STGNRLPDNR RPGTPSLNSE ESVTTTCFES GFADQQRQGG ETDRIKLLNL FV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634971.11e-172PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SZE84e-85LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0B0MXL81e-170A0A0B0MXL8_GOSAR; LOB domain-containing 39-like protein
STRINGGorai.008G081100.11e-164(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.12e-87LOB domain-containing protein 39