PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38823_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 189aa    MW: 21213.9 Da    PI: 5.7643
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38823_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.2e-2058110256
                         AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                 +y+GVr+++ +g+++AeIrd  +++    r +lg+f+taeeAa+a+++a+ +++g+
  Cotton_A_38823_BGI-A2_v1.0  58 RYRGVRRRP-WGKYAAEIRDsTRQG--GPRLWLGTFDTAEEAARAYDRAAFSMRGH 110
                                 69*******.**********44334..4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.24858117IPR001471AP2/ERF domain
CDDcd000181.59E-2958118No hitNo description
SMARTSM003801.3E-3158123IPR001471AP2/ERF domain
PfamPF008477.6E-1558110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-2958118IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2158118IPR016177DNA-binding domain
PRINTSPR003672.0E-115970IPR001471AP2/ERF domain
PRINTSPR003672.0E-118399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MIVDLFWMFL LVYMGGQLCA FATEYKCGTE FDALFQVQTM PMEQNKMKKA GVAESSVRYR  60
GVRRRPWGKY AAEIRDSTRQ GGPRLWLGTF DTAEEAARAY DRAAFSMRGH SAILNFRDEH  120
IISSTTVNSP PSATPSSSSS SSSSSASAAS SSSYFFEHVK SKKDDERIVL ELECLDDKLL  180
EELLDFENK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2951124779Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3949341e-108GQ394934.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1957 SSR marker DPL0287 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747775.11e-106PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC54e-35ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1U8P9F01e-105A0A1U8P9F0_GOSHI; ethylene-responsive transcription factor ERF096-like
STRINGGorai.001G176600.16e-74(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2504834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.12e-21ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]