PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_38953_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 415aa    MW: 48718.8 Da    PI: 9.7707
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_38953_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.4e-093966126
                                --S---SGGGGTS..--TTTTT-SS-SS CS
                     zf-CCCH  1 yktelCrffartG..tCkyGdrCkFaHg 26
                                +k ++C  f+++   tC++G  C+F+H+
  Cotton_A_38953_BGI-A2_v1.0 39 WKVAICGEFMKSRlkTCSRGTACNFIHC 66
                                899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.9723868IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-73966IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MLGHCILVLR CRYARLAVKN IKQITISMVK CEFVNITRWK VAICGEFMKS RLKTCSRGTA  60
CNFIHCFRNP GGDYEWADWD KPPPRYWMKK MAALFGYGDE AEFEKQREQD NFGHLRNPNH  120
LVKSDDDRHR SRRSISRERG KNNDRKQRKD LDGRCDRQKT SLKREQNSER ILDTSSDGGY  180
SESDIDGARD TDKIRSHFHA KRNSKWQSDS SEYLADTNRV YEDRECQTKK RRRHQSKGEY  240
GGSVVCIHED YGDQLDRDRD SGKSSRHYIR ESSLNDWGAS KNKIHVSDSL VKQLSTVSDR  300
ESHHHNRQKS SGNLDEVLGP DDYGNADYRT HESNSSDHGS ERNKGRHYDH QSKRSQHLVE  360
CSELLDAPVH QAKLKDKRDL KRGRHSRHRY EEIDFSDDRE GKHHVKRRSH GHKRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1405409KRRSH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606259.10.0PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1
RefseqXP_017606260.10.0PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X2
TrEMBLA0A1U8KR690.0A0A1U8KR69_GOSHI; zinc finger CCCH domain-containing protein 5-like isoform X1
STRINGGorai.005G120100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59752025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.13e-42C3H family protein