PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_38986_BGI-A2_v1.0

Common Name

F383_19620

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 281aa MW: 29702.5 Da PI: 4.6411

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_38986_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	255	278	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C+ksF + L++H + H Cotton_A_38986_BGI-A2_v1.0 255 FSCGSCSKSFGSEGGLESHKKAkH 278 89*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.801	255	281	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	257	278	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MLLLGIEVKA GQPIKTDPGA SHVIHLSQAT LGESKNKAES VPLYVNVNGK KLVLGTLSHQ 60 NCPQLCFDLV FEQGFELSHN WKNGSVYFLD SEEESSEDEE LPVAAENGKA KTDAKTANAG 120 KPDAVKQAVK ITEPSDNKKN EDDDDDSDSE DGSGSDDEDD SEDEDAEMSV DESSDDEDEE 180 TPKKVESSKK RPAEAATPVS AKKAKPAATP QKTDLMISLF LALADGKKGG HTATPHPSKQ 240 AGKTSGKSPK SGGQFSCGSC SKSFGSEGGL ESHKKAKHGG K

Functional Description ? help Back to Top
Source	Description
UniProt	Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By fertilization. {ECO:0000269\|PubMed:15082924}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016671982.1	1e-148	PREDICTED: histone deacetylase HDT1-like
Swissprot	Q6V9I6	2e-54	HDT1_SOLCH; Histone deacetylase HDT1
TrEMBL	A0A0B0MIZ2	1e-150	A0A0B0MIZ2_GOSAR; Histone deacetylase HDT1
STRING	Gorai.006G109300.1	1e-146	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2027	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	2e-28	histone deacetylase 3

Publications ? help Back to Top
Lagacé M,Chantha SC,Major G,Matton DP Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules. Plant Mol. Biol., 2003. 53(6): p. 759-69 [PMID:15082924]