PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_39278_BGI-A2_v1.0
Common NameF383_24007
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 251aa    MW: 28287.4 Da    PI: 9.0504
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_39278_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.7e-1578122347
                                 SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Cotton_A_39278_BGI-A2_v1.0  78 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 122
                                 8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.649122IPR017884SANT domain
PROSITE profilePS5129420.44771127IPR017930Myb domain
SuperFamilySSF466891.22E-1772126IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-1874126IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.5E-1375122IPR009057Homeodomain-like
SMARTSM007172.1E-1375125IPR001005SANT/Myb domain
PfamPF002491.5E-1278122IPR001005SANT/Myb domain
CDDcd001678.81E-1278123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MIPGKTVGDV IKQYRELEED VSDIEAGLIP IPGYSSDSFT LEWGNDSQGF AGFRHYYTPG  60
KRGTGSRSSD QERKKGVPWT EEEHRQFLMG LKKYGKGDWR NISRNFVTTR TPTQVASHAQ  120
KYFIRQVTGG KDKRRSSIHD ITTVNVPDTP SSSPDRCKHS SSSDSSAVIQ AQQQAKLATT  180
KEIDFEWKQQ NGATMVFNRT SNCNAFLSPF CGISSYGPKL EEQNLLGETL PRSQFGSYNT  240
HFQMQSMQQH Q
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017616123.10.0PREDICTED: transcription factor DIVARICATA-like isoform X2
SwissprotQ8S9H78e-91DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0B0P9270.0A0A0B0P927_GOSAR; Transcription factor MYB1R1
STRINGGorai.012G112000.11e-177(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-93MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]