PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_39383_BGI-A2_v1.0

Common Name

F383_36809

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 332aa MW: 36170 Da PI: 7.2918

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_39383_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.9	2e-14	149	195	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Cotton_A_39383_BGI-A2_v1.0 149 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 195 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.907	146	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.9E-12	149	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-14	150	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-14	150	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-13	152	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.55E-5	159	198	No hit	No description
Gene3D	G3DSA:3.30.70.260	2.4E-4	231	278	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MCAKKEEYRD YPRPIHNLQA SQQHHQLHND ELFGATTGGL VFPQLPWSFP PVQALSPIQY 60 FTGNPVQDHV HGSFLVPPPP SSYGGLFTST APPAAALQFA YDGAPSVNRL RILSDSFGAV 120 GSAPLGLQAE LGKMTAQEIM DAKAMAASKS HSEAERRRRE RINNHLAKLR SLLPSTTKTD 180 KASLLAEVIQ HVKELKRQTC LIAETSPVPT ETDELTVDTS DQDGKFVIKA SLCCEDRSDL 240 LPDLIKALKD LRLKTLKAEI TTLGGRVKNV LFITGEEQES SCSSDGGDVI GSIQEALKAV 300 MEKSTCGNES NSSGNVKRQR TNISTVLQHR SL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	159	ERRRRE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC751427	0.0	KC751427.1 Gossypium hirsutum bHLH transcription factor (bHLH3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017617393.1	0.0	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	2e-97	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A0B0MAN2	0.0	A0A0B0MAN2_GOSAR; Transcription factor bHLH30-like protein
STRING	Gorai.013G079600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7048	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-92	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]