PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_39420_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 156aa    MW: 17690.2 Da    PI: 10.5144
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_39420_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.91.1e-121147339
                                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
                      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                                i n+s r+ t+ kR +g++KK +EL +LC+++ + ii
  Cotton_A_39420_BGI-A2_v1.0 11 ITNDSSRKATYKKRNKGLMKKMSELNILCGIDNCAII 47
                                89******************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-7155IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-15147IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.914147IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-8323IPR002100Transcription factor, MADS-box
CDDcd002661.52E-18347No hitNo description
PfamPF003197.8E-141147IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MIRKKVKLAY ITNDSSRKAT YKKRNKGLMK KMSELNILCG IDNCAIIKCV VRGLNCGDIN  60
DLNLLLDEKM SNIVKRMDAF AMTPLYTQGA LSSSSSSMVA LPPMTMVMPK AIPRTGTKGI  120
VQLDVNNMDP MKRKQWIMEL MNNNNNILKL MWEVMR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6202151e-126JX620215.1 Gossypium hirsutum clone NBRI_GE66400 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016676364.12e-53PREDICTED: uncharacterized protein LOC107895624
TrEMBLA0A1U8IKI15e-52A0A1U8IKI1_GOSHI; uncharacterized protein LOC107895624
STRINGGorai.013G155200.13e-50(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.26e-16M-type_MADS family protein