PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_39445_BGI-A2_v1.0
Common NameF383_34089
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 566aa    MW: 62292.4 Da    PI: 6.458
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_39445_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like734.3e-23199248151
                     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                                 k r++W+ eLH++Fv av+qL G ++AtPk+ilelm+v+ Lt ++v SHLQ
  Cotton_A_39445_BGI-A2_v1.0 199 KSRVVWSAELHSKFVAAVNQL-GMKNATPKKILELMNVQKLTTQNVGSHLQ 248
                                 68*******************.9**************************** PP
2Response_reg79.89.3e-27201261109
                                 EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS
                Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekdpDlillDiempgmdGlellkeireeepklpiivvtahgee 83 
                                 vl vdD+p+ + ll+++l++ +y +v+++ ++  al+ll+++++Dl++ D+ mp+mdG++ll+     e++lp+i+++a+g+ 
  Cotton_A_39445_BGI-A2_v1.0  20 VLAVDDDPTCLLLLETLLRRCKY-NVTTTNQAITALKLLRQNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDT 100
                                 799********************.**************************************87754.558************ PP

                                 HHHHHHHHTTESEEEESS--HHHHHH CS
                Response_reg  84 edalealkaGakdflsKpfdpeelvk 109
                                 + + + +  Ga d+l Kp+ +eel +
  Cotton_A_39445_BGI-A2_v1.0 101 NVVMKGITHGACDYLLKPVRIEELNN 126
                                 **********************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363928.1E-1391546IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.5E-4217154No hitNo description
SMARTSM004481.1E-3018128IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521723.13E-3718144IPR011006CheY-like superfamily
PROSITE profilePS5011042.2319132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.8E-2420126IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.11E-2521124No hitNo description
SuperFamilySSF466894.48E-14197249IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-23198249IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-19199248IPR006447Myb domain, plants
PfamPF002497.0E-6201248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MRVERIINDT NDEFPIGIRV LAVDDDPTCL LLLETLLRRC KYNVTTTNQA ITALKLLRQN  60
KFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSANGDT NVVMKGITHG ACDYLLKPVR  120
IEELNNIWQH VVRRKRFERK DRYNSDSQDK LRADSGEAVG MGSIGNNGKL KKKRKDQDED  180
EERDENGHHN NEDPSFRKKS RVVWSAELHS KFVAAVNQLG MKNATPKKIL ELMNVQKLTT  240
QNVGSHLQHP LYLKRISCAA NQEVNIAATV RMRSPNGLGN FHTLAGSNQL HNAAFRSFPP  300
RGVLRRLNTH AGLLIRDLPS PGTIRSGHGQ SSVNSGNDQC KLQSFVSGIH NANILQGLPM  360
SLELDQVQTN NGVSHIGELQ IADSTTVFPV SSSLIDATIT GFSGNPLLGV TSNSLMLEAS  420
SQQAGNSRDI VPAIGFRNGN TLSDLAPIAP ASNRESNADL QREPIPINCN ARELITSAPQ  480
EWNSPYQSNV TPCSMNSSIP VSGTMVQFGL CLDQNNSMDS DSIGPSSFID NSAMEQSIID  540
KEGYLMLEIW GQGSHIPYNI GLLEDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16197257364ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633741.10.0PREDICTED: two-component response regulator ARR12-like
TrEMBLA0A1U8PAC80.0A0A1U8PAC8_GOSHI; Two-component response regulator
STRINGGorai.001G096700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2505534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-108response regulator 12