PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_39505_BGI-A2_v1.0
Common NameF383_29964
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 243aa    MW: 27742.9 Da    PI: 5.2062
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_39505_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.5e-141461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg+WT eEd +l + +   G ++W+t+++  g+ R++k+c++rw +yl
  Cotton_A_39505_BGI-A2_v1.0 14 RGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYL 61
                                89******************************99************97 PP
2Myb_DNA-binding58.41.7e-1867110146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 rg++T+ E++++++++++lG++ W++Ia++++ gRt++++k++w++
  Cotton_A_39505_BGI-A2_v1.0  67 RGAFTESEEDQIIQLHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                                 89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.486961IPR017930Myb domain
SuperFamilySSF466896.39E-2911108IPR009057Homeodomain-like
SMARTSM007172.4E-61363IPR001005SANT/Myb domain
PfamPF002496.3E-121461IPR001005SANT/Myb domain
CDDcd001679.06E-51661No hitNo description
PROSITE profilePS5129427.69662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-2765117IPR009057Homeodomain-like
SMARTSM007171.5E-1766114IPR001005SANT/Myb domain
PfamPF002493.2E-1767110IPR001005SANT/Myb domain
CDDcd001672.37E-1269110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRTV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGAF TESEEDQIIQ LHARLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKLLG  120
LDPVTHKPIQ KAEENDGDSS NKSNGDDQQQ GIKLDDDEKV EGIELSLDET NDLFNSYQML  180
CESFDLDSWL NQDAANNTCS SSYSMEESSN KSSTGETNST IGEDSLKQWV DSVDSFLSWD  240
SFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28121165108B-MYB
1gv2_A5e-28121162105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-271211656159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-271211656159MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-28121162105C-Myb DNA-Binding Domain
1msf_C6e-28121162105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610108.10.0PREDICTED: myb-related protein 315-like
SwissprotP813949e-83MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A0B0MUM01e-179A0A0B0MUM0_GOSAR; Myb-related protein
STRINGGorai.006G037500.11e-161(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.18e-85myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]