PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_39521_BGI-A2_v1.0
Common NameF383_27437
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 669aa    MW: 72576.9 Da    PI: 6.9118
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_39521_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.53e-28229282155
                     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Cotton_A_39521_BGI-A2_v1.0 229 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 282
                                 79*******************.********************************8 PP
2Response_reg77.93.6e-26451531109
                                 EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTT CS
                Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahg 81 
                                 vl+vdD+ + +++l+q+l + +y +v+++ +++ al+ll+e++  +D+il D+ mp+mdG++ll++   e  +lp+i+++a g
  Cotton_A_39521_BGI-A2_v1.0  45 VLVVDDDITCLKILEQMLHRCRY-HVTTCPQAKVALNLLRERKgcFDVILSDVYMPDMDGYKLLEHVGLEM-DLPVIMMSADG 125
                                 89*********************.*******************************************6644.8********** PP

                                 THHHHHHHHHTTESEEEESS--HHHHHH CS
                Response_reg  82 eeedalealkaGakdflsKpfdpeelvk 109
                                 +   + + ++ Ga d+l Kp+ +eel +
  Cotton_A_39521_BGI-A2_v1.0 126 STRAVMKGIRHGACDYLIKPIREEELKN 153
                                 *************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575128No hitNo description
Gene3DG3DSA:3.40.50.23007.9E-4242178No hitNo description
SuperFamilySSF521729.82E-3642168IPR011006CheY-like superfamily
SMARTSM004485.4E-3043155IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.27544159IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.7E-2345153IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.36E-2646158No hitNo description
SuperFamilySSF466891.25E-19226286IPR009057Homeodomain-like
PROSITE profilePS5129411.209226285IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-30226287IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-24229282IPR006447Myb domain, plants
PfamPF002499.7E-7231280IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MATMHRVVQS SVSTSDATTT SYGGLTSCKA ADIVISDQFP AGLRVLVVDD DITCLKILEQ  60
MLHRCRYHVT TCPQAKVALN LLRERKGCFD VILSDVYMPD MDGYKLLEHV GLEMDLPVIM  120
MSADGSTRAV MKGIRHGACD YLIKPIREEE LKNIWQHVVR KKWNENKELE HSGSLDDTDQ  180
HKRGHDDAEY GSSANDATDT SLKPLKKRSN SKEGDNGEID NDDPSTSKKP RVVWSVELHQ  240
QFVSAVNQLG IDKAVPKRIL ELMNVPGLTR ENVASHLQKF RLYLKRISGV AQQGGIANPL  300
CGPVEAKVKI GSLGSFNIQP LAASGQIPPQ TLAALHAELL GRPAGNLVVA MDQSALLQAT  360
PHGPKCIQVD HGVAFIQDLV KSESSSSKHF SQSFAPVEDV ASGFRSWPSN NIDTAGPSNS  420
GGLSTQNGNM LIDLLQQQQQ LQKPQQRSTV SELRRSINVQ PSCHVVPSQS SASFQAGNSP  480
VSVTQNGSYS RTAVIDYNFL SSQSNCPSLN IGQVSDVTLQ TTGVLSGYIP LASVSPSVSS  540
CSVNADNCAS QQVQTSSITF KASRRLPGFV HSTSNIPDPY GSTKSGDLLN QEPFNNLGYI  600
NKGTCLPAKF AVDEFQSHLS SSSHGKVFCE NIGTRVKQEP SMEFGDNAKV GIPMLQQFPP  660
NDLMSVFTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-23225288164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017649547.10.0PREDICTED: two-component response regulator ORR21-like
RefseqXP_017649548.10.0PREDICTED: two-component response regulator ORR21-like
SwissprotA2XE311e-157ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-157ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A0B0MSN50.0A0A0B0MSN5_GOSAR; Two-component response regulator
STRINGGorai.005G156900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-121response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]