PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_39830_BGI-A2_v1.0
Common NameF383_24881
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 349aa    MW: 39547.6 Da    PI: 4.7583
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_39830_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.6e-12180223654
                                 HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                  ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Cotton_A_39830_BGI-A2_v1.0 180 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 223
                                 589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-15177235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-12180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9180223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14181234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.69E-5181227No hitNo description
CDDcd048730.00735275316No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MELSQHGFLE ELLAPRRDSW TTFSAGVTEF LPNGSWNFDS FDENPTLATS NLSFVAFSPP  60
PPPDQTPSFE CPFSDQPYPF VDGFTVRDMD SSYTNVNVVH PHTSPFPATQ QDFPSMVDDE  120
DQFGLLTTDH QQHSLEETKS SCKVEIEQTS NIQGFNMGDL LLGKKRAKTK KLEGQPSKNL  180
MAERRRRKRL NDRLSMLRSI VPKISKMDRT SILGDTIDYM KELLERINKL QEEDTKEGII  240
INQQSLLKNL KEQKPDEVLV RNSPKFDVER RDTDTRIDIC CATKPGLLLS TVSTLEALGL  300
EIQQCVISCF NDFSMQASCS EVEEQRTLIS SEDIKQALFR NAGYGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182189ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017629524.10.0PREDICTED: transcription factor bHLH61-like
SwissprotQ9LSL12e-87BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0B0MTP50.0A0A0B0MTP5_GOSAR; Transcription factor bHLH93-like protein
STRINGGorai.007G229900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.18e-90beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]