PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_39954_BGI-A2_v1.0
Common NameF383_09897
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 130aa    MW: 14411 Da    PI: 7.7082
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_39954_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA41.25.3e-1370913758
                   CBFB_NFYA 37 pylheSRhkhAlrRpRgsgGrF 58
                                pylheSRh hAlrR+RgsgGrF
  Cotton_A_39954_BGI-A2_v1.0 70 PYLHESRHLHALRRARGSGGRF 91
                                9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.1E-53494IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.9E-107091IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115215.1117094IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MPYTTPQHAV APAAYPYPDP YYRSIFAPYD AQSYPPQPYG GQPMVHLQLM GIQQAGVPLP  60
SDAVEEPVFP YLHESRHLHA LRRARGSGGR FLNSKKNENK QNEAAPSDKS QSNINLNSDK  120
NELASTEGKC
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016749806.16e-87PREDICTED: nuclear transcription factor Y subunit A-7-like
RefseqXP_016749808.16e-87PREDICTED: nuclear transcription factor Y subunit A-7-like
RefseqXP_017641532.16e-87PREDICTED: nuclear transcription factor Y subunit A-7-like
RefseqXP_017641533.16e-87PREDICTED: nuclear transcription factor Y subunit A-7-like
RefseqXP_017642281.16e-87PREDICTED: nuclear transcription factor Y subunit A-7-like
RefseqXP_017642282.16e-87PREDICTED: nuclear transcription factor Y subunit A-7-like
SwissprotQ84JP13e-39NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A0B0NSG01e-85A0A0B0NSG0_GOSAR; Nuclear transcription factor Y subunit A-7-like protein
TrEMBLA0A1U8PF161e-85A0A1U8PF16_GOSHI; nuclear transcription factor Y subunit A-7-like
TrEMBLA0A2P5XWA81e-85A0A2P5XWA8_GOSBA; Uncharacterized protein
STRINGGorai.009G115000.11e-85(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41682756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-27nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]