PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_40026_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 93aa MW: 10541.7 Da PI: 10.3158

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_40026_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.3	1.7e-05	28	57	22	54
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksL 54 +Lrell ++ ++kK + a L +++++Ik+L Cotton_A_40026_BGI-A2_v1.0 28 RLRELLSTN---KKKKRNAAKLLDETCNHIKKL 57 7******...*****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-6	27	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-5	28	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MSSKRSSGRS NERSSGSRSN ESEDFSLRLR ELLSTNKKKK RNAAKLLDET CNHIKKLNGE 60 VDDLSNRISE LLNSSETESS NINANILRQF LQQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016670185.1	6e-57	PREDICTED: transcription factor PRE3-like
TrEMBL	A0A1U8HVZ9	1e-55	A0A1U8HVZ9_GOSHI; transcription factor PRE3-like
TrEMBL	A0A2P5SAP3	1e-55	A0A2P5SAP3_GOSBA; Uncharacterized protein
STRING	Gorai.006G021500.1	3e-45	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25061	3	4