PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_40074_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 255aa    MW: 28945.6 Da    PI: 8.4973
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_40074_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-141361148
                                TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                +g W+++Ede+l++++++ G   +W+t +r  g+ R++k+ck+rw +yl
  Cotton_A_40074_BGI-A2_v1.0 13 KGTWSKQEDEKLLNYIRKNGEAgCWRTLPRAAGLLRCGKSCKLRWINYL 61
                                799*****************989**********99************97 PP
2Myb_DNA-binding51.52.3e-1668112248
                                 SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 g++ ++Ed+l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Cotton_A_40074_BGI-A2_v1.0  68 GNFGEDEDDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 112
                                 6899*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.786861IPR017930Myb domain
SuperFamilySSF466891.55E-2511108IPR009057Homeodomain-like
SMARTSM007175.8E-111263IPR001005SANT/Myb domain
PfamPF002495.5E-121361IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-181468IPR009057Homeodomain-like
CDDcd001676.72E-81561No hitNo description
PROSITE profilePS5129425.38662116IPR017930Myb domain
SMARTSM007173.7E-1566114IPR001005SANT/Myb domain
PfamPF002495.3E-1568112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2569117IPR009057Homeodomain-like
CDDcd001671.90E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MRKPCCDKRD TNKGTWSKQE DEKLLNYIRK NGEAGCWRTL PRAAGLLRCG KSCKLRWINY  60
LRPDVKIGNF GEDEDDLIIK LHALLGNRWS LIAGRLPGRT DNEVKNYWNS HLRRKLINMG  120
IDPNKHSLTR HNRPHHNSNT NTSASATLIS SASKLPKSHK CIAPPNNKPW RDNDQVSDAA  180
SCLLEDEDDD NLPCSTTQYQ LPDLNLELTI SVSAPNSTAK LEQHDHQIQE PNHKQCSNIS  240
SDLHFSSTPT LLLFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25101164108B-MYB
1h8a_C4e-251011624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591632e-59AJ459163.1 Gossypium hirsutum partial myb133 gene, clone pGhMYB133.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622619.10.0PREDICTED: myb-related protein 308-like
SwissprotQ9SZP13e-77MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A2P5XZW80.0A0A2P5XZW8_GOSBA; Uncharacterized protein
STRINGGorai.002G180300.11e-178(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2506234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.16e-77myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]