PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_40087_BGI-A2_v1.0
Common NameF383_08270
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 254aa    MW: 28388.2 Da    PI: 6.3078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_40087_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-124188455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                +h   Er RR+++++ f+ L  llP++      K +K++++ +Av YIk+Lq
  Cotton_A_40087_BGI-A2_v1.0 41 MHIWTERERRKKMRNMFSSLHALLPQL----PAKADKSTVVDEAVTYIKNLQ 88
                                67778*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-153798IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.8843787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.56E-144092No hitNo description
Gene3DG3DSA:4.10.280.109.6E-154099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-94188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-94593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.63E-5172236No hitNo description
Gene3DG3DSA:3.30.70.2600.001175249No hitNo description
CDDcd048730.00169177211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MELEKVAVAE VGEKRSRKGG LKQGKANGGV DHGADQSEHE MHIWTERERR KKMRNMFSSL  60
HALLPQLPAK ADKSTVVDEA VTYIKNLQQT LQTLEKQKLE KLKNSATVDY DQSSIITSQV  120
QPPESREAFF TDNQGPTNNY PMTIDISQTF PAQASPACFQ TWFSSNVVIS MCGDDAQINV  180
CSPRKPGTFA TILYILEKHQ LEVVSAHISS DQYRTMYMIH VHAGGASEQF PELLSIEETF  240
KLAAGEMNLC LFSC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641021.10.0PREDICTED: transcription factor bHLH95-like
TrEMBLA0A0B0N4G10.0A0A0B0N4G1_GOSAR; Transcription factor bHLH95-like protein
STRINGGorai.002G135000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50742549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-41bHLH family protein