PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_40101_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 88aa MW: 10153.7 Da PI: 9.7539

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_40101_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	8.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd l +++++G+g+W+t + g+ R+ k+c++rw +yl Cotton_A_40101_BGI-A2_v1.0 14 KGSWTPEEDIVLTSYIQEHGPGNWRTLPTNTGLLRCSKSCRLRWPNYL 61 799***************************99********9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.169	9	65	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.7E-19	12	60	IPR009057	Homeodomain-like
SMART	SM00717	4.1E-10	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	8.3E-14	14	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.78E-20	15	87	IPR009057	Homeodomain-like
CDD	cd00167	9.99E-9	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-5	61	87	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MGRPSCCYKV GVNKGSWTPE EDIVLTSYIQ EHGPGNWRTL PTNTGLLRCS KSCRLRWPNY 60 LRPGIRRGNF TEHEEKMIIH LQALLANR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017608949.1	4e-61	PREDICTED: myb-related protein 306-like isoform X1
Swissprot	P81392	2e-53	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A1Q3AR09	2e-52	A0A1Q3AR09_CEPFO; Myb_DNA-binding domain-containing protein
STRING	XP_009369299.1	1e-52	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	2e-53	myb domain protein 94

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]