PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_40102_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 437aa MW: 49165.4 Da PI: 5.0415

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_40102_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	232	2.7e-71	213	434	137	358
GRAS 137 egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldes 217 ++ p+lR+Tgv++pes+ + + +g rL+k+Ae+l vpfef++ + +r++ ++l++L+ +pgEal+Vn+++qlh+++des Cotton_A_40102_BGI-A2_v1.0 213 RQMPQLRLTGVDDPESVqrLNGGFKIVGLRLKKLAEALVVPFEFQA-IPSRTSLVTLSMLDYRPGEALVVNFAFQLHHMPDES 294 5789*********997777889******************.7******************************* PP GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 vs++++rd++L++vk+l+Pk+v+vveq++++n+++F+ rf+ea +yysa+f+sl+a+lpres++r++vE+++l+r+ivn+vac Cotton_A_40102_BGI-A2_v1.0 295 VSTTNQRDQLLRMVKGLNPKLVTVVEQDVNTNTSPFFPRFIEAYSYYSAVFESLDATLPRESQDRMNVEKQCLARDIVNIVAC 377 ******************************************************************************* PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 g+er+er e ++kWr+r+++aGF++ p+s+++ + + ++++ ++ y+++e+ g l Cotton_A_40102_BGI-A2_v1.0 378 DGEERIERYEVAGKWRARIMMAGFTSHPMSQNVIDMIWKHIKEYCDR-YKLKEDLGPL 434 *********************************9999999955.99997766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	34.782	1	431	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.5E-69	213	434	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MSLVRSADPA TAAYRNTKLY SIQGISDSSG LSAQMFGSDR HNPVYINDSY SSESYKKCFL 60 DSPTEELIHS SSSGISGSSF RPQDGSSYKL RDYLEIQSLD TLDSDTDKMK LKLQELERAL 120 LADKYIYEDV DMFDAGLSME IDGEWSDPIR TDQSLHDSPK ESSSSGSCHS SISSNKEVSH 180 ASSKIPKQML IHCAAVLSEG NIEEPSSITN ELRQMPQLRL TGVDDPESVQ RLNGGFKIVG 240 LRLKKLAEAL VVPFEFQAIP SRTSLVTLSM LDYRPGEALV VNFAFQLHHM PDESVSTTNQ 300 RDQLLRMVKG LNPKLVTVVE QDVNTNTSPF FPRFIEAYSY YSAVFESLDA TLPRESQDRM 360 NVEKQCLARD IVNIVACDGE ERIERYEVAG KWRARIMMAG FTSHPMSQNV IDMIWKHIKE 420 YCDRYKLKED LGPLHFG

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MSLVRSADPA TAAYRNTKLY SIQGISDSSG LSAQMFGSDR HNPVYINDSY SSESYKKCFL  60
DSPTEELIHS SSSGISGSSF RPQDGSSYKL RDYLEIQSLD TLDSDTDKMK LKLQELERAL  120
LADKYIYEDV DMFDAGLSME IDGEWSDPIR TDQSLHDSPK ESSSSGSCHS SISSNKEVSH  180
ASSKIPKQML IHCAAVLSEG NIEEPSSITN ELRQMPQLRL TGVDDPESVQ RLNGGFKIVG  240
LRLKKLAEAL VVPFEFQAIP SRTSLVTLSM LDYRPGEALV VNFAFQLHHM PDESVSTTNQ  300
RDQLLRMVKG LNPKLVTVVE QDVNTNTSPF FPRFIEAYSY YSAVFESLDA TLPRESQDRM  360
NVEKQCLARD IVNIVACDGE ERIERYEVAG KWRARIMMAG FTSHPMSQNV IDMIWKHIKE  420
YCDRYKLKED LGPLHFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-22	216	437	158	366	Protein SCARECROW
5b3h_A	1e-22	216	437	157	365	Protein SCARECROW
5b3h_D	1e-22	216	437	157	365	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021285318.1	1e-141	scarecrow-like protein 1 isoform X1
Refseq	XP_021285320.1	1e-141	scarecrow-like protein 1 isoform X1
Refseq	XP_021285321.1	1e-142	scarecrow-like protein 1 isoform X2
Refseq	XP_021285322.1	1e-142	scarecrow-like protein 1 isoform X2
Refseq	XP_021285323.1	1e-142	scarecrow-like protein 1 isoform X2
Swissprot	Q9SDQ3	1e-117	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	A0A0D2PPV1	0.0	A0A0D2PPV1_GOSRA; Uncharacterized protein
STRING	EOY16564	1e-140	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	1e-119	SCARECROW-like 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]