PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_40144_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 171aa    MW: 18937.1 Da    PI: 8.0561
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_40144_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.16.1e-10691022655
                         AP2  26 g...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     k+ +r +lg+f+taeeAa a+++a+  l+g
  Cotton_A_40144_BGI-A2_v1.0  69 HllpKNrTRLWLGTFDTAEEAALAYDKAAYMLRG 102
                                 36665669*********************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.57646110IPR001471AP2/ERF domain
SMARTSM003802.2E-867116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-1672111IPR001471AP2/ERF domain
CDDcd000181.18E-1672112No hitNo description
SuperFamilySSF541716.28E-1273111IPR016177DNA-binding domain
PfamPF008474.9E-675102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MYNSSGNSVF SDSSREELMK ALEPFMKSSS STFPLSSSSS SPSSCSYSQL TPSQPYMDPE  60
FCSPSSSNHL LPKNRTRLWL GTFDTAEEAA LAYDKAAYML RGDFARLSFP HLKHQGAHVS  120
GEFGGFKPLY SFVDAKLQAV CQSLQKQENS AKTSYVFNSK PKVEFDYSVK S
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5270944e-75HQ527094.1 Gossypium herbaceum clone NBRI_A_EYI1BW401BBBAS simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437484.14e-59PREDICTED: ethylene-responsive transcription factor RAP2-4-like
TrEMBLA0A2P5WDE21e-63A0A2P5WDE2_GOSBA; Uncharacterized protein
STRINGEOX921519e-51(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3599322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-29related to AP2 4