PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_40228_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 214aa MW: 24709.8 Da PI: 9.2588

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_40228_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.9	1.3e-21	80	139	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Cotton_A_40228_BGI-A2_v1.0 80 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITEQLgkygKIEGKNVFYWFQNHKARERQ 139 7***************99************************************97 PP
2	Wus_type_Homeobox	118	4.1e-38	80	141	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++it++L +yGkie+kNVfyWFQN+kaRerqkq Cotton_A_40228_BGI-A2_v1.0 80 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITEQLGKYGKIEGKNVFYWFQNHKARERQKQ 141 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.69E-13	71	145	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.398	75	140	IPR001356	Homeobox domain
SMART	SM00389	6.7E-8	77	144	IPR001356	Homeobox domain
Pfam	PF00046	2.7E-19	80	139	IPR001356	Homeobox domain
CDD	cd00086	2.14E-5	80	141	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.0E-8	81	139	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MKMHQLACGF WEQEPLLSLG CKRLRPLAPK LHSNSTYTTV SSFDLKSFIR PDSGPRKLGN 60 GPSEDNNRHS PPVETHPGGT RWNPTQEQIG ILEMLYRGGM RTPNAQQIEQ ITEQLGKYGK 120 IEGKNVFYWF QNHKARERQK QKRSSLGLTH CPRSSAPITP ITLDTREETM EREEDSPCKR 180 KCRSWSFEEK DSRSSSKEDE NRTLELFPLH PESR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017641150.1	1e-159	PREDICTED: WUSCHEL-related homeobox 4-like
Swissprot	Q6X7J9	2e-71	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A1U8KMP7	1e-156	A0A1U8KMP7_GOSHI; WUSCHEL-related homeobox 4-like
STRING	Gorai.002G134800.1	1e-157	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5980	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	1e-66	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]