PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_40253_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 187aa    MW: 20263.8 Da    PI: 9.9314
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_40253_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.91.3e-081140332
                                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
                      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCd 32
                                i n++ r  ++ kRr g+ KK  EL +LC+
  Cotton_A_40253_BGI-A2_v1.0 11 IANNTTRRASLKKRRLGLVKKVMELTTLCG 40
                                889**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.848140IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-11140IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-4152IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-6323IPR002100Transcription factor, MADS-box
PfamPF003195.9E-81140IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MIRKKVKLAW IANNTTRRAS LKKRRLGLVK KVMELTTLCG QPSPLAGERS SLNVASDHLG  60
LPRLPFGEGR SSNVVVDYLG LSRPSFGEGN SSNVVVGHFG LQRPPLSSNS STSSFDIFRI  120
LNIVIDLLDN NNLGPFSGQD VRLGHYPLGP LGSSYPANEF GRNHFEFFNG ESSSSGDTSN  180
SEIEGTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAWIANNTTRRASLKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453454.13e-51PREDICTED: agamous-like MADS-box protein AGL92
TrEMBLA0A2P5XXU01e-88A0A2P5XXU0_GOSBA; Uncharacterized protein
STRINGGorai.011G177600.11e-17(Gossypium raimondii)